Evidence map›Paper›PMID 36362039›Full record

ArticleInternational journal of molecular sciences2022

Formation of Fibrils by the Periplasmic Molecular Chaperone HdeB from

Yui Nakata, Yuuto Kitazaki, Hitomi Kanaoka, Erika Shingen, Rina Uehara, Kunihiro Hongo, Yasushi Kawata, Tomohiro Mizobata

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 89% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yui NakataDepartment of Chemistry and Biotechnology, Tottori University, Tottori 680-8552, Japan.
Yuuto KitazakiDepartment of Chemistry and Biotechnology, Tottori University, Tottori 680-8552, Japan.
Hitomi KanaokaDepartment of Chemistry and Biotechnology, Tottori University, Tottori 680-8552, Japan.
Erika ShingenDepartment of Chemistry and Biotechnology, Tottori University, Tottori 680-8552, Japan.
Rina UeharaCourse of Biotechnology, Graduate School of Sustainable Social Sciences, Tottori University, Tottori 680-8552, Japan.
Kunihiro HongoDepartment of Chemistry and Biotechnology, Tottori University, Tottori 680-8552, Japan.
Yasushi KawataDepartment of Chemistry and Biotechnology, Tottori University, Tottori 680-8552, Japan.ORCID 0000-0002-2744-1506
Tomohiro MizobataDepartment of Chemistry and Biotechnology, Tottori University, Tottori 680-8552, Japan.ORCID 0000-0002-7808-2099
Tottori University · JP

Funding

Japan Society for the Promotion of Science 19K06513Skylark Food Science Institute Not applicableTottori University Center for Green Sustainable Chemistry PF-MU2 Project
6 · The paper itself

Abstract

The molecular chaperones HdeA and HdeB of the Escherichia coli (E. coli) periplasm protect client proteins from acid denaturation through a unique mechanism that utilizes their acid denatured states to bind clients. We previously demonstrated that the active, acid-denatured form of HdeA is also prone to forming inactive, amyloid fibril-like aggregates in a pH-dependent, reversible manner. In this study, we report that HdeB also displays a similar tendency to form fibrils at low pH. HdeB fibrils were observed at pH < 3 in the presence of NaCl. Similar to HdeA, HdeB fibrils could be resolubilized by a simple shift to neutral pH. In the case of HdeB, however, we found that after extended incubation at low pH, HdeB fibrils were converted into a form that could not resolubilize at pH 7. Fresh fibrils seeded from these “transformed” fibrils were also incapable of resolubilizing at pH 7, suggesting that the transition from reversible to irreversible fibrils involved a specific conformational change that was transmissible through fibril seeds. Analyses of fibril secondary structure indicated that HdeB fibrils retained significant alpha helical content regardless of the conditions under which fibrils were formed. Fibrils that were formed from HdeB that had been treated to remove its intrinsic disulfide bond also were incapable of resolubilizing at pH 7, suggesting that certain residual structures that are retained in acid-denatured HdeB are important for this protein to recover its soluble state from the fibril form.

Indexed as

Escherichia coliEscherichia coli ProteinsMolecular ChaperonesAcidsAmyloidHumansHydrogen-Ion ConcentrationPeriplasmProtein Structure, SecondaryAcidsAmyloidEscherichia coli ProteinshdeA protein, E colihdeB protein, E coliMolecular Chaperonesamyloid fibrildenaturationHdeBmolecular chaperoneperiplasm

Identifiers

PMID36362039
PMCPMC9657021
OpenAlexW4307868833

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.