Evidence map›Paper›PMID 36361816›Full record

ArticleInternational journal of molecular sciences2022

The Gene Expression Landscape of Prostate Cancer BM Reveals Close Interaction with the Bone Microenvironment.

Alireza Saraji, Kang Duan, Christian Watermann, Katharina Hempel, Marie C Roesch, Rosemarie Krupar, Janine Stegmann-Frehse, Danny Jonigk, Mark Philipp Kuehnel, Wolfram Klapper and 5 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. The Diagnostic Performance ofIranian journal of public health · 2024
    Review
  6. Role of long pentraxin PTX3 in cancer.Clinical and experimental medicine · 2023
    Review
  7. Article
  8. CEACAM6 Promotes Lung MetastasisCancer genomics & proteomics
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Alireza SarajiInstitute of Pathology, University Hospital Schleswig-Holstein, Campus Luebeck, 23538 Luebeck, Germany.ORCID 0000-0003-3053-8373
Kang DuanInstitute of Pathology, University Hospital Schleswig-Holstein, Campus Luebeck, 23538 Luebeck, Germany.
Christian WatermannInstitute of Pathology, University Hospital Schleswig-Holstein, Campus Luebeck, 23538 Luebeck, Germany.
Katharina HempelInstitute of Pathology, University Hospital Schleswig-Holstein, Campus Luebeck, 23538 Luebeck, Germany.
Marie C RoeschDepartment of Urology, University Hospital Schleswig-Holstein, Campus Luebeck, 23538 Luebeck, Germany.
Rosemarie KruparResearch Center Borstel, Leibniz Lung Center, 23845 Borstel, Germany.
Janine Stegmann-FrehseInstitute of Pathology, University Hospital Schleswig-Holstein, Campus Luebeck, 23538 Luebeck, Germany.
Danny JonigkInstitute of Pathology, Hannover Medical School, 30625 Hannover, Germany.ORCID 0000-0002-5251-2281
Mark Philipp KuehnelInstitute of Pathology, Hannover Medical School, 30625 Hannover, Germany.
Wolfram KlapperInstitute of Pathology, Hematopathology Section and Lymph Node Registry, Universitätsklinikum Schleswig-Holstein, Campus Kiel, 24105 Kiel, Germany.
Axel S MerseburgerDepartment of Urology, University Hospital Schleswig-Holstein, Campus Luebeck, 23538 Luebeck, Germany.
Jutta KirfelInstitute of Pathology, University Hospital Schleswig-Holstein, Campus Luebeck, 23538 Luebeck, Germany.
Sven PernerInstitute of Pathology, University Hospital Schleswig-Holstein, Campus Luebeck, 23538 Luebeck, Germany.
Anne OffermannInstitute of Pathology, University Hospital Schleswig-Holstein, Campus Luebeck, 23538 Luebeck, Germany.
Verena SailerInstitute of Pathology, University Hospital Schleswig-Holstein, Campus Luebeck, 23538 Luebeck, Germany.
University Hospital Schleswig-Holstein · DEMedizinische Hochschule Hannover · DEResearch Center Borstel - Leibniz Lung Center · DE

Funding

Deutsche Forschungsgemeinschaft SPP2084
6 · The paper itself

Abstract

Bone metastatic (BM) prostate cancer (PCa) belongs to the most lethal form of PCa, and therapeutic options are limited. Molecular profiling of metastases contributes to the understanding of mechanisms defining the bone metastatic niche. Our aim was to explore the transcriptional profile of PCa BM and to identify genes that drive progression. Paraffin-embedded tissues of 28 primary PCa and 30 BM were submitted to RNA extraction and analyzed by RNA sequencing using the Nanostring nCounter gene expression platform. A total of 770 cancer-related genes were measured using the Nanostring™ PanCancer progression panel. Gene Ontology (GO), KEGG, Reactome, STRING, Metascape, PANTHER, and Pubmed were used for data integration and gene annotation. We identified 116 differentially expressed genes (DEG) in BM compared to primaries. The most significant DEGs include

Indexed as

Bone NeoplasmsProstatic NeoplasmsComputational BiologyGene ExpressionGene Expression ProfilingGene Expression Regulation, NeoplasticGene OntologyHumansMaleProstateTumor MicroenvironmentBMprostate cancertranscriptometumor microenvironment

Identifiers

PMID36361816
PMCPMC9656691
OpenAlexW4308276090

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.