Evidence map›Paper›PMID 36361593›Full record

ArticleInternational journal of molecular sciences2022

Introgression of a Complex Genomic Structural Variation Causes Hybrid Male Sterility in

Na Xu, Hai Xu, Zhengjin Xu, Fengcheng Li, Quan Xu

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Na XuRice Research Institute, Shenyang Agricultural University, Shenyang 110866, China.
Hai XuRice Research Institute, Shenyang Agricultural University, Shenyang 110866, China.
Zhengjin XuRice Research Institute, Shenyang Agricultural University, Shenyang 110866, China.
Fengcheng LiRice Research Institute, Shenyang Agricultural University, Shenyang 110866, China.
Quan XuRice Research Institute, Shenyang Agricultural University, Shenyang 110866, China.ORCID 0000-0003-2698-5314

Funding

National Natural Science Foundation of China 32071982
6 · The paper itself

Abstract

Hybrids between different subspecies of rice Oryza sativa L. commonly show hybrid sterility. Here we show that a widely planted commercial japonica/GJ variety, DHX2, exhibited hybrid sterility when crossing with other GJ varieties. Using the high-quality genome assembly, we identified three copies of the Sc gene in DHX2, whereas Nipponbare (Nip) had only one copy of Sc. Knocking out the extra copies of Sc in DHX2 significantly improved the pollen fertility of the F1 plant of DHX2/Nip cross. The population structure analysis revealed that a slight introgression from Basmati1 might occur in the genome of DHX2. We demonstrated that both DHX2 and Basmati1 harbored three copies of Sc. Moreover, the introgression of GS3 and BADH2/fgr from Basmati1 confers the slender and fragrance grain of DHX2. These results add to our understanding of the hybrid sterility of inter-subspecies and intra-subspecies and may provide a novel strategy for hybrid breeding.

Indexed as

Infertility, MaleOryzaGenomic Structural VariationHumansMalePlant BreedingPlant Infertilitycopy number variationDUF1618 proteingenome introgressionhybrid sterilityOryza sativa L.

Identifiers

PMID36361593
PMCPMC9656383

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.