Evidence map›Paper›PMID 36359427›Full record

ArticleDiagnostics (Basel, Switzerland)2022

Urinary Protein Profiling for Potential Biomarkers of Chronic Kidney Disease: A Pilot Study.

Abduzhappar Gaipov, Zhalaliddin Makhammajanov, Zhanna Dauyey, Zhannur Markhametova, Kamilla Mussina, Assem Nogaibayeva, Larissa Kozina, Dana Auganova, Pavel Tarlykov, Rostislav Bukasov and 5 more

Registry-linked trialAbstract read
In one paragraph

Article in Diagnostics (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04311684 (Development and Validation of Hybrid Brillouin-Raman Spectroscopy for Non-invasive Assessment of Mechano-chemical Properties of Urine Proteins as Biomarkers of Kidney Diseases), which is not on this map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04311684 unknown statusnot on this map

Development and Validation of Hybrid Brillouin-Raman Spectroscopy for Non-invasive Assessment of Mechano-chemical Properties of Urine Proteins as Biomarkers of Kidney Diseases

TypeobservationalSponsorNazarbayev UniversityRan2020 to 2023Enrolled125ConditionsNephrotic SyndromeArmshybrid Brillouin-Raman spectroscopy
3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Abduzhappar GaipovDepartment of Medicine, Nazarbayev University School of Medicine, Astana 010000, Kazakhstan.ORCID 0000-0002-9844-8772
Zhalaliddin MakhammajanovDepartment of Biomedical Sciences, Nazarbayev University School of Medicine, Astana 010000, Kazakhstan.ORCID 0000-0002-0971-227X
Zhanna DauyeyDepartment of Medicine, Nazarbayev University School of Medicine, Astana 010000, Kazakhstan.ORCID 0000-0001-7857-9356
Zhannur MarkhametovaDepartment of Medicine, Nazarbayev University School of Medicine, Astana 010000, Kazakhstan.
Kamilla MussinaDepartment of Medicine, Nazarbayev University School of Medicine, Astana 010000, Kazakhstan.ORCID 0000-0003-2146-3111
Assem NogaibayevaDepartment of Education, LLP BBNura, Astana 010000, Kazakhstan.
Larissa KozinaDepartment of Laboratory Diagnostics, National Scientific Medical Center, Astana 010000, Kazakhstan.
Dana AuganovaDepartment of Proteomics and Mass Spectrometry, National Center for Biotechnology, Astana 010000, Kazakhstan.
Pavel TarlykovDepartment of Proteomics and Mass Spectrometry, National Center for Biotechnology, Astana 010000, Kazakhstan.ORCID 0000-0003-2075-307X
Rostislav BukasovDepartment of Chemistry, SSH, Nazarbayev University, Astana 010000, Kazakhstan.
Zhandos UtegulovDepartment of Physics, SSH, Nazarbayev University, Astana 010000, Kazakhstan.
Duman TurebekovDepartment of Internal Medicine, Astana Medical University, Astana 010000, Kazakhstan.
Maria Jose SolerDepartment of Nephrology, Vall d'Hebron University Hospital, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain.ORCID 0000-0003-3621-0766
Alberto OrtizDepartment of Medicine, Universidad Autonoma de Madrid and IIS-Fundacion Jimenez Diaz, 28040 Madrid, Spain.ORCID 0000-0002-9805-9523
Mehmet KanbayDivision of Nephrology, Department of Medicine, Koc University, 34450 Istanbul, Turkey.ORCID 0000-0002-1297-0675

Funding

Nazarbayev University 091019CRP2105
6 · The paper itself

Abstract

Proteinuria is a risk factor for chronic kidney disease (CKD) progression and associated complications. However, there is insufficient information on individual protein components in urine and the severity of CKD. We aimed to investigate urinary proteomics and its association with proteinuria and kidney function in early-stage CKD and in healthy individuals. A 24 h urine sample of 42 individuals (21-CKD and 21-healthy individuals) was used for mass spectrometry-based proteomics analysis. An exponentially modified protein abundance index (emPAI) was calculated for each protein. Data were analyzed by Mascot software using the SwissProt database and bioinformatics tools. Overall, 298 unique proteins were identified in the cohort; of them, 250 proteins belong to the control group with median (IQR) emPAI 39.1 (19−53) and 142 proteins belong to the CKD group with median (IQR) emPAI 67.8 (49−117). The level of 24 h proteinuria positively correlated with emPAI (r = 0.390, p = 0.011). The emPAI of some urinary proteomics had close positive (ALBU, ZA2G, IGKC) and negative (OSTP, CD59, UROM, KNG1, RNAS1, CD44, AMBP) correlations (r < 0.419, p < 0.001) with 24 h proteinuria levels. Additionally, a few proteins (VTDB, AACT, A1AG2, VTNC, and CD44) significantly correlated with kidney function. In this proteomics study, several urinary proteins correlated with proteinuria and kidney function. Pathway analysis identified subpathways potentially related to early proteinuric CKD, allowing the design of prospective studies that explore their response to therapy and their relationship to long-term outcomes.

Indexed as

biomarkerschronic kidney diseaseproteinuriaurinary proteomics

Identifiers

PMID36359427
PMCPMC9689510

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.