Evidence map›Paper›PMID 36359161›Full record

ArticleAnimals : an open access journal from MDPI2022

Complete Mitochondrial Genome, Genetic Diversity and Phylogenetic Analysis of Pingpu Yellow Chicken (

Sihua Jin, Jingjing Xia, Fumin Jia, Lijun Jiang, Xin Wang, Xuling Liu, Xing Liu, Zhaoyu Geng

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PubMed Full text at PMC Publisher
In one paragraph

Article in Animals : an open access journal from MDPI, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sihua JinCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Jingjing XiaCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Fumin JiaCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Lijun JiangCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Xin WangCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Xuling LiuCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Xing LiuCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Zhaoyu GengCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.

Funding

Anhui Poultry-Industry Technology Research System AHCYJSTX-06Municipal Science and Technology Cooperation Project KJ20200323Municipal Science and Technology Cooperation Project KJ2021564Program for Young Outstanding Scientists of University gxyqZD2022017The Science and Technology Major Project of Anhui Province 201903a06020018
6 · The paper itself

Abstract

In this study, the complete mitochondrial genome sequence of one female Pingpu Yellow chicken (PYC) and the D-loop sequences obtained from 60 chickens were analyzed to investigate their genetic diversity and phylogeny. The total length of the PYC mitogenome is 16,785 bp and that of the complete D-loop is 1231 to 1232 bp. The mitogenome comprises 22 transfer ribonucleic acids (tRNAs), 2 ribosomal ribonucleic acids (rRNAs), 13 protein-coding genes (PCGs), and 1 non-coding control region (D-loop). Additionally, the total length of the 13 PCGs is 11,394 bp, accounting for 67.88% of the complete mitogenome sequence, and the PCGs region has 3798 codons. A majority of the PCGs have ATG as the start codon. The haplotype and nucleotide diversity of PYC were 1.00000 ± 0.00029 and 0.32678 ± 0.29756, respectively. In the D-Loop data set, we found 25 polymorphic sites, which determined 18 haplotypes and 3 major haplogroups (A-C). Therefore, PYC has a classical vertebrate mitogenome, with comparatively high nucleotide diversity and potentially three maternal lineages. The neighbor-joining (NJ) tree analysis results showed PYC grouped with the Luhua (MT555049.1) and Nandan chickens (KP269069.1), which indicates that PYC is closely related to these two breeds.

Indexed as

D-loop regionmtDNAphylogenyPingpu Yellow chicken

Identifiers

PMID36359161
PMCPMC9654125

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.