Evidence map›Paper›PMID 36358902›Full record

ArticleBiomolecules2022

MARGINAL: An Automatic Classification of Variants in

Vasiliki Karalidou, Despoina Kalfakakou, Athanasios Papathanasiou, Florentia Fostira, George K Matsopoulos

Abstract read
In one paragraph

Article in Biomolecules, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Vasiliki KaralidouSchool of Electrical and Computer Engineering, National Technical University of Athens, 15780 Athens, Greece.ORCID 0000-0002-3052-3932
Despoina KalfakakouMolecular Diagnostics Laboratory, INRaSTES, National Center for Scientific Research NCSR Demokritos, 15341 Athens, Greece.ORCID 0000-0002-3369-2360
Athanasios PapathanasiouMolecular Diagnostics Laboratory, INRaSTES, National Center for Scientific Research NCSR Demokritos, 15341 Athens, Greece.ORCID 0000-0001-6520-9751
Florentia FostiraMolecular Diagnostics Laboratory, INRaSTES, National Center for Scientific Research NCSR Demokritos, 15341 Athens, Greece.ORCID 0000-0003-2751-2332
George K MatsopoulosSchool of Electrical and Computer Engineering, National Technical University of Athens, 15780 Athens, Greece.ORCID 0000-0002-2600-9914

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Implementation of next-generation sequencing (NGS) for the genetic analysis of hereditary diseases has resulted in a vast number of genetic variants identified daily, leading to inadequate variant interpretation and, consequently, a lack of useful clinical information for treatment decisions. Herein, we present MARGINAL 1.0.0, a machine learning (ML)-based software for the interpretation of rare

Indexed as

Breast NeoplasmsGenes, BRCA2BRCA1 ProteinBRCA2 ProteinFemaleGenetic Predisposition to DiseaseGenetic TestingGenetic VariationHumansMachine LearningBRCA1 ProteinBRCA1 protein, humanBRCA2 ProteinBRCA2 protein, humanACMG-AMP guidelinesBRCA1/2 genescancergenomicsgermlinemachine learningrare variant interpretationvariant pathogenicity

Identifiers

PMID36358902
PMCPMC9687470

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.