Evidence map›Paper›PMID 36357781›Full record

ArticleThe ISME journal2023

Abundant and cosmopolitan lineage of cyanopodoviruses lacking a DNA polymerase gene.

Lanlan Cai, Yue Chen, Shiwei Xiao, Riyue Liu, Maoqiu He, Rui Zhang, Qinglu Zeng

Open access · hybridAbstract read
In one paragraph

Article in The ISME journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

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  7. Genome sequences of the firstMicrobial genomics · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Lanlan Cai *Department of Ocean Science, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, China.
Yue Chen *Department of Ocean Science, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, China.
Shiwei XiaoDepartment of Ocean Science, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, China.
Riyue LiuXiamen Cardiovascular Hospital, Xiamen University, Xiamen, China.
Maoqiu HeFishery College, Zhejiang Ocean University, Zhoushan, 316022, China.
Rui ZhangState Key Laboratory of Marine Environmental Science, College of Ocean and Earth Sciences, Xiamen University (Xiang'an), Fujian, China.ORCID http://orcid.org/0000-0003-1325-2613
Qinglu ZengDepartment of Ocean Science, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, China. zeng@ust.hk.ORCID http://orcid.org/0000-0002-5616-7155
Hong Kong University of Science and Technology · HKFirst Affiliated Hospital of Xiamen University · CNXiamen University · CNZhejiang Ocean University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyanopodoviruses affect the mortality and population dynamics of the unicellular picocyanobacteria Prochlorococcus and Synechococcus, the dominant primary producers in the oceans. Known cyanopodoviruses all contain the DNA polymerase gene (DNA pol) that is important for phage DNA replication and widely used in field quantification and diversity studies. However, we isolated 18 cyanopodoviruses without identifiable DNA pol. They form a new MPP-C clade that was separated from the existing MPP-A, MPP-B, and P-RSP2 clades. The MPP-C phages have the smallest genomes (37.3-37.9 kb) among sequenced cyanophages, and show longer latent periods than the MPP-B phages. Metagenomic reads of both clades are highly abundant in surface waters, but the MPP-C phages show higher relative abundance in surface waters than in deeper waters, while MPP-B phages have higher relative abundance in deeper waters. Our study reveals that cyanophages with distinct genomic contents and infection kinetics can exhibit different depth profiles in the oceans.

Indexed as

BacteriophagesSynechococcusDNA-Directed DNA PolymeraseOceans and SeasPhylogenyDNA-Directed DNA Polymerase

Identifiers

PMID36357781
PMCPMC9860041
OpenAlexW4308890855

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.