Evidence map›Paper›PMID 36357561›Full record

ArticleCommunications biology2022

Immune and spermatogenesis-related loci are involved in the development of extreme patterns of male infertility.

Miriam Cerván-Martín, Frank Tüttelmann, Alexandra M Lopes, Lara Bossini-Castillo, Rocío Rivera-Egea, Nicolás Garrido, Saturnino Lujan, Gema Romeu, Samuel Santos-Ribeiro, José A Castilla and 36 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

46 authors at 16 institutions in 3 countries.

Miriam Cerván-Martín *Departamento de Genética e Instituto de Biotecnología, Centro de Investigación Biomédica (CIBM), Universidad de Granada, Granada, Spain.
Frank Tüttelmann *Institute of Reproductive Genetics, University of Münster, Münster, Germany.ORCID 0000-0003-2745-9965
Alexandra M Lopes *Instituto de Investigação e Inovação em Saúde, Universidade do Porto (I3S), Porto, Portugal.
Lara Bossini-CastilloDepartamento de Genética e Instituto de Biotecnología, Centro de Investigación Biomédica (CIBM), Universidad de Granada, Granada, Spain.
Rocío Rivera-EgeaAndrology Laboratory and Sperm Bank, IVI-RMA Valencia, Valencia, Spain.
Nicolás GarridoIVI Foundation, Health Research Institute La Fe, Valencia, Spain.
Saturnino LujanServicio de Urología. Hospital Universitari i Politecnic La Fe e Instituto de Investigación Sanitaria La Fe (IIS La Fe), Valencia, Spain.
Gema RomeuServicio de Urología. Hospital Universitari i Politecnic La Fe e Instituto de Investigación Sanitaria La Fe (IIS La Fe), Valencia, Spain.
Samuel Santos-RibeiroIVI-RMA Lisbon, Lisbon, Portugal.
José A CastillaInstituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain.ORCID 0000-0003-2185-565X
M Carmen GonzalvoInstituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain.
Ana ClaveroInstituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain.
Vicente MaldonadoUGC de Obstetricia y Ginecología, Complejo Hospitalario de Jaén, Jaén, Spain.
F Javier VicenteInstituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain.
Sara González-MuñozDepartamento de Genética e Instituto de Biotecnología, Centro de Investigación Biomédica (CIBM), Universidad de Granada, Granada, Spain.
Andrea Guzmán-JiménezDepartamento de Genética e Instituto de Biotecnología, Centro de Investigación Biomédica (CIBM), Universidad de Granada, Granada, Spain.
Miguel BurgosDepartamento de Genética e Instituto de Biotecnología, Centro de Investigación Biomédica (CIBM), Universidad de Granada, Granada, Spain.
Rafael JiménezDepartamento de Genética e Instituto de Biotecnología, Centro de Investigación Biomédica (CIBM), Universidad de Granada, Granada, Spain.
Alberto PachecoIVI Foundation, Health Research Institute La Fe, Valencia, Spain.
Cristina GonzálezIVI Foundation, Health Research Institute La Fe, Valencia, Spain.
Susana GómezIVI Foundation, Health Research Institute La Fe, Valencia, Spain.
David AmorósIVI Foundation, Health Research Institute La Fe, Valencia, Spain.
Jesus AguilarIVI Foundation, Health Research Institute La Fe, Valencia, Spain.
Fernando QuintanaIVI Foundation, Health Research Institute La Fe, Valencia, Spain.ORCID 0000-0003-4460-0270
Carlos Calhaz-JorgeUnidade de Medicina da Reprodução, Departamento de Obstetrícia, Ginecologia e Medicina da Reprodução, Hospital de Santa Maria, Centro Hospitalar Universitário de Lisboa Norte, Lisbon, Portugal.
Ana AguiarUnidade de Medicina da Reprodução, Departamento de Obstetrícia, Ginecologia e Medicina da Reprodução, Hospital de Santa Maria, Centro Hospitalar Universitário de Lisboa Norte, Lisbon, Portugal.ORCID 0000-0001-7841-7410
Joaquim NunesUnidade de Medicina da Reprodução, Departamento de Obstetrícia, Ginecologia e Medicina da Reprodução, Hospital de Santa Maria, Centro Hospitalar Universitário de Lisboa Norte, Lisbon, Portugal.
Sandra SousaUnidade de Medicina da Reprodução, Departamento de Obstetrícia, Ginecologia e Medicina da Reprodução, Hospital de Santa Maria, Centro Hospitalar Universitário de Lisboa Norte, Lisbon, Portugal.
Isabel PereiraUnidade de Medicina da Reprodução, Departamento de Obstetrícia, Ginecologia e Medicina da Reprodução, Hospital de Santa Maria, Centro Hospitalar Universitário de Lisboa Norte, Lisbon, Portugal.ORCID 0000-0001-7076-0927
Maria Graça PintoCentro de Medicina Reprodutiva, Maternidade Dr. Alfredo da Costa, Centro Hospitalar Universitário de Lisboa Central, Lisbon, Portugal.
Sónia CorreiaCentro de Medicina Reprodutiva, Maternidade Dr. Alfredo da Costa, Centro Hospitalar Universitário de Lisboa Central, Lisbon, Portugal.
Josvany Sánchez-CurbeloLaboratory of Seminology and Embryology, Andrology Service, Fundació Puigvert, Barcelona, Spain.
Olga López-RodrigoLaboratory of Seminology and Embryology, Andrology Service, Fundació Puigvert, Barcelona, Spain.
Javier MartínInstituto de Parasitología y Biomedicina 'López-Neyra', IPBLN-CSIC, PTS Granada, Granada, Spain.
Iris Pereira-CaetanoDepartamento de Genética Humana, Instituto Nacional de Saúde Dr. Ricardo Jorge, Lisbon, Portugal.
Patricia I MarquesInstituto de Investigação e Inovação em Saúde, Universidade do Porto (I3S), Porto, Portugal.
Filipa CarvalhoInstituto de Investigação e Inovação em Saúde, Universidade do Porto (I3S), Porto, Portugal.
Alberto BarrosInstituto de Investigação e Inovação em Saúde, Universidade do Porto (I3S), Porto, Portugal.
Jörg GromollInstitute of Reproductive and Regenerative Biology, Centre of Reproductive Medicine and Andrology, University of Münster, University Clinics, Münster, Germany.
Lluís BassasLaboratory of Seminology and Embryology, Andrology Service, Fundació Puigvert, Barcelona, Spain.
Susana SeixasInstituto de Investigação e Inovação em Saúde, Universidade do Porto (I3S), Porto, Portugal.
João GonçalvesDepartamento de Genética Humana, Instituto Nacional de Saúde Dr. Ricardo Jorge, Lisbon, Portugal.
Sara LarribaHuman Molecular Genetics Group, Bellvitge Biomedical Research Institute (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.
Sabine KlieschDepartment of Clinical and Surgical Andrology, Centre of Reproductive Medicine and Andrology, University Hospital Münster, Münster, Germany.
Rogelio J Palomino-MoralesInstituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain. rpm@ugr.es.
F David CarmonaDepartamento de Genética e Instituto de Biotecnología, Centro de Investigación Biomédica (CIBM), Universidad de Granada, Granada, Spain. dcarmona@ugr.es.ORCID 0000-0002-1427-7639
Universidad de Granada · ESHospital de Santa Maria · PTUniversidade do Porto · PTInstituto de Investigación Biosanitaria de Granada · ESHospital Universitari i Politècnic La Fe · ESPuigvert Foundation · ESNational Institute of Health Dr. Ricardo Jorge · PTUnidade Local de Saúde de São José · PTUniversity of Münster · DEComplejo Hospitalario de Jaén · ESInstitut d'Investigació Biomédica de Bellvitge · ESInstituto de Parasitología y Biomedicina "López - Neyra" · ESUniversidad Alfonso X el Sabio · ESUniversity Hospital Münster · DEUniversity of Lisbon · PTValencian Infertility Institute · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We conducted a genome-wide association study in a large population of infertile men due to unexplained spermatogenic failure (SPGF). More than seven million genetic variants were analysed in 1,274 SPGF cases and 1,951 unaffected controls from two independent European cohorts. Two genomic regions were associated with the most severe histological pattern of SPGF, defined by Sertoli cell-only (SCO) phenotype, namely the MHC class II gene HLA-DRB1 (rs1136759, P = 1.32E-08, OR = 1.80) and an upstream locus of VRK1 (rs115054029, P = 4.24E-08, OR = 3.14), which encodes a protein kinase involved in the regulation of spermatogenesis. The SCO-associated rs1136759 allele (G) determines a serine in the position 13 of the HLA-DRβ1 molecule located in the antigen-binding pocket. Overall, our data support the notion of unexplained SPGF as a complex trait influenced by common variation in the genome, with the SCO phenotype likely representing an immune-mediated condition.

Indexed as

Genome-Wide Association StudyInfertility, MaleAllelesHumansIntracellular Signaling Peptides and ProteinsMaleProtein Serine-Threonine KinasesSertoli CellsSpermatogenesisIntracellular Signaling Peptides and ProteinsProtein Serine-Threonine KinasesVRK1 protein, human

Identifiers

PMID36357561
PMCPMC9649734
OpenAlexW4308696502

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.