Evidence map›Paper›PMID 36357524›Full record

ArticleNature plants2022

Polymerization of the backbone of the pectic polysaccharide rhamnogalacturonan I.

Robert A Amos, Melani A Atmodjo, Chin Huang, Zhongwei Gao, Aarya Venkat, Rahil Taujale, Natarajan Kannan, Kelley W Moremen, Debra Mohnen

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature plants, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Robert A AmosDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA.
Melani A AtmodjoDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA.ORCID http://orcid.org/0000-0001-5176-0008
Chin HuangDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA.
Zhongwei GaoComplex Carbohydrate Research Center, University of Georgia, Athens, GA, USA.
Aarya VenkatDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA.
Rahil TaujaleDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA.
Natarajan KannanDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA.
Kelley W MoremenDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA.ORCID http://orcid.org/0000-0003-1768-582X
Debra MohnenDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA. dmohnen@ccrc.uga.edu.ORCID http://orcid.org/0000-0001-5249-635X
University of Georgia · US

Funding

TR&D3. Approaches to Proteoglycan Function at Biochemical and Cellular LevelsP41GM103390 · NIGMS · UNIVERSITY OF GEORGIA · PI MOREMEN, KELLEY W. · 2012 to 2019
$14.5M
Origin of N-Glycan Site-Specific HeterogeneityR01GM130915 · NIGMS · UNIVERSITY OF GEORGIA · PI KANNAN, NATARAJAN, MOREMEN, KELLEY W. · 2019 to 2022
$3.4M
Unlocking sequence-structure-function-disease relationships in large protein super-familiesR35GM139656 · NIGMS · UNIVERSITY OF GEORGIA · PI KANNAN, NATARAJAN · 2021 to 2025
$2.2M
NIGMS NIH HHS P41 GM103390NIGMS NIH HHS R01 GM130915NIGMS NIH HHS R35 GM139656
6 · The paper itself

Abstract

Rhamnogalacturonan I (RG-I) is a major plant cell wall pectic polysaccharide defined by its repeating disaccharide backbone structure of [4)-α-D-GalA-(1,2)-α-L-Rha-(1,]. A family of RG-I:Rhamnosyltransferases (RRT) has previously been identified, but synthesis of the RG-I backbone has not been demonstrated in vitro because the identity of Rhamnogalacturonan I:Galaturonosyltransferase (RG-I:GalAT) was unknown. Here a putative glycosyltransferase, At1g28240/MUCI70, is shown to be an RG-I:GalAT. The name RGGAT1 is proposed to reflect the catalytic activity of this enzyme. When incubated together with the rhamnosyltransferase RRT4, the combined activities of RGGAT1 and RRT4 result in elongation of RG-I acceptors in vitro into a polymeric product. RGGAT1 is a member of a new GT family categorized as GT116, which does not group into existing GT-A clades and is phylogenetically distinct from the GALACTURONOSYLTRANSFERASE (GAUT) family of GalA transferases that synthesize the backbone of the pectin homogalacturonan. RGGAT1 has a predicted GT-A fold structure but employs a metal-independent catalytic mechanism that is rare among glycosyltransferases with this fold type. The identification of RGGAT1 and the 8-member Arabidopsis GT116 family provides a new avenue for studying the mechanism of RG-I synthesis and the function of RG-I in plants.

Indexed as

ArabidopsisPectinsGlycosyltransferasesPolymerizationPolysaccharidesGlycosyltransferasesPectinsPolysaccharidesrhamnogalacturonan I

Identifiers

PMID36357524
PMCPMC10115348
OpenAlexW4308695747

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.