Evidence map›Paper›PMID 36357507›Full record

ArticleScientific reports2022

Five years' experience of the clinical exome sequencing in a Spanish single center.

A Arteche-López, A Ávila-Fernández, R Riveiro Álvarez, B Almoguera, A Bustamante Aragonés, I Martin-Merida, M A López Martínez, A Giménez Pardo, C Vélez-Monsalve, J Gallego Merlo and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

A Arteche-LópezDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
A Ávila-FernándezDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
R Riveiro ÁlvarezDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
B AlmogueraDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
A Bustamante AragonésDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
I Martin-MeridaDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
M A López MartínezDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
A Giménez PardoDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
C Vélez-MonsalveDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
J Gallego MerloDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
I García VaraDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
F Blanco-KellyDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
S Tahsin SwafiriDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
I Lorda SánchezDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
M J Trujillo TiebasDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain.
C AyusoDepartment of Genetics, Health Research Institute-Jimenez Diaz Foundation University Hospital (IIS-FJD), Avda. Reyes Católicos 2, 28040, Madrid, Spain. cayuso@fjd.es.
Hospital Universitario Fundación Jiménez Díaz · ESHospital Universitario La Paz · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nowadays, exome sequencing is a robust and cost-efficient genetic diagnostic tool already implemented in many clinical laboratories. Despite it has undoubtedly improved our diagnostic capacity and has allowed the discovery of many new Mendelian-disease genes, it only provides a molecular diagnosis in up to 25-30% of cases. Here, we comprehensively evaluate the results of a large sample set of 4974 clinical exomes performed in our laboratory over a period of 5 years, showing a global diagnostic rate of 24.62% (1391/4974). For the evaluation we establish different groups of diseases and demonstrate how the diagnostic rate is not only dependent on the analyzed group of diseases (43.12% in ophthalmological cases vs 16.61% in neurological cases) but on the specific disorder (47.49% in retinal dystrophies vs 24.02% in optic atrophy; 18.88% in neuropathies/paraparesias vs 11.43% in dementias). We also detail the most frequent mutated genes within each group of disorders and discuss, on our experience, further investigations and directions needed for the benefit of patients.

Indexed as

Optic AtrophyRetinal DystrophiesExomeExome SequencingHumans

Identifiers

PMID36357507
PMCPMC9649665
OpenAlexW4308887298

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.