Evidence map›Paper›PMID 36356138›Full record

ArticleScience (New York, N.Y.)2022

Structures of a mobile intron retroelement poised to attack its structured DNA target.

Kevin Chung, Ling Xu, Pengxin Chai, Junhui Peng, Swapnil C Devarkar, Anna Marie Pyle

Open access · hybridAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  10. Review
  11. RNA-based programmable DNA cleavage.Nature chemical biology · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. sRNA Structural Modeling Based on NMR Data.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Kevin Chung *Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.ORCID 0000-0003-0402-6833
Ling Xu *Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06511, USA.ORCID 0000-0002-9057-0829
Pengxin ChaiDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.ORCID 0000-0001-9702-978X
Junhui PengLaboratory of Evolutionary Genetics and Genomics, The Rockefeller University, New York, NY 10065, USA.ORCID 0000-0003-2855-2299
Swapnil C DevarkarDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.ORCID 0000-0002-9271-243X
Anna Marie PyleDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06511, USA.ORCID 0000-0001-9045-8872
Yale University · USHoward Hughes Medical Institute · USRockefeller University · US

Funding

High-throughput electron cryo-microscopeS10OD023603 · OD · YALE UNIVERSITY · PI SIGWORTH, FREDERICK J · 2018 to 2018
$1.9M
Howard Hughes Medical InstituteNIH HHS S10 OD023603
6 · The paper itself

Abstract

Group II introns are ribozymes that catalyze their self-excision and function as retroelements that invade DNA. As retrotransposons, group II introns form ribonucleoprotein (RNP) complexes that roam the genome, integrating by reversal of forward splicing. Here we show that retrotransposition is achieved by a tertiary complex between a structurally elaborate ribozyme, its protein mobility factor, and a structured DNA substrate. We solved cryo-electron microscopy structures of an intact group IIC intron-maturase retroelement that was poised for integration into a DNA stem-loop motif. By visualizing the RNP before and after DNA targeting, we show that it is primed for attack and fits perfectly with its DNA target. This study reveals design principles of a prototypical retroelement and reinforces the hypothesis that group II introns are ancient elements of genetic diversification.

Indexed as

IntronsRetroelementsRibonucleoproteinsRNA, CatalyticRNA SplicingCryoelectron MicroscopyEubacteriumRNA-Directed DNA PolymeraseRetroelementsRibonucleoproteinsRNA, CatalyticRNA-Directed DNA Polymerase

Identifiers

PMID36356138
PMCPMC10190682
OpenAlexW4308884535

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.