Evidence map›Paper›PMID 36354332›Full record

ArticlemBio2022

Genomic Variation across a Clinical Cryptococcus Population Linked to Disease Outcome.

Poppy Sephton-Clark, Jennifer L Tenor, Dena L Toffaletti, Nancy Meyers, Charles Giamberardino, Síle F Molloy, Julia R Palmucci, Adrienne Chan, Tarsizio Chikaonda, Robert Heyderman and 10 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
6.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. The hypervirulent Type-1/Type-17 phenotype ofInfection and immunity · 2025
    Article
  10. Cryptococcal nutrient acquisition and pathogenesis: dining on the host.Microbiology and molecular biology reviews : MMBR · 2025
    Review
  11. Article
  12. Article
  13. Distinct evolutionary trajectories following loss of RNA interference inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Distinct evolutionary trajectories following loss of RNA interference inbioRxiv : the preprint server for biology · 2024
    Article
  15. Review
  16. Molecular Diagnostics ofDiseases (Basel, Switzerland) · 2024
    Review
  17. Review
  18. Review
  19. The Rabbit Model of Cryptococcal Meningitis.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 4 countries.

Poppy Sephton-ClarkInfectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Jennifer L TenorDivision of Infectious Diseases, Department of Medicine, Duke University School of Medicinegrid.471396.e, Durham, North Carolina, USA.
Dena L ToffalettiDivision of Infectious Diseases, Department of Medicine, Duke University School of Medicinegrid.471396.e, Durham, North Carolina, USA.
Nancy MeyersDivision of Infectious Diseases, Department of Medicine, Duke University School of Medicinegrid.471396.e, Durham, North Carolina, USA.
Charles GiamberardinoDivision of Infectious Diseases, Department of Medicine, Duke University School of Medicinegrid.471396.e, Durham, North Carolina, USA.
Síle F MolloyCentre for Global Health, Institute of Infection and Immunity, St George's University of Londongrid.4464.2, London, United Kingdom.
Julia R PalmucciDivision of Infectious Diseases, Department of Medicine, Duke University School of Medicinegrid.471396.e, Durham, North Carolina, USA.
Adrienne ChanSunnybrook Health Sciences Centre, Toronto, Ontario, Canada.
Tarsizio ChikaondaMalawi-Liverpool-Wellcome Trust Clinical Research Programmegrid.419393.5, Blantyre, Malawi.
Robert HeydermanDivision of Infection and Immunity, University College London, London, United Kingdom.
Mina HosseinipourUNC Project Malawi, University of North Carolina, Chapel Hill, North Carolina, USA.
Newton KalataMalawi-Liverpool-Wellcome Trust Clinical Research Programmegrid.419393.5, Blantyre, Malawi.
Cecilia KanyamaUNC Project Malawi, University of North Carolina, Chapel Hill, North Carolina, USA.
Christopher KukachaMalawi-Liverpool-Wellcome Trust Clinical Research Programmegrid.419393.5, Blantyre, Malawi.
Duncan LupiyaTisungane Clinic, Zomba Central Hospital, Zomba, Malawi.
Henry C MwandumbaMalawi-Liverpool-Wellcome Trust Clinical Research Programmegrid.419393.5, Blantyre, Malawi.
Thomas HarrisonCentre for Global Health, Institute of Infection and Immunity, St George's University of Londongrid.4464.2, London, United Kingdom.
Tihana BicanicCentre for Global Health, Institute of Infection and Immunity, St George's University of Londongrid.4464.2, London, United Kingdom.
John R PerfectDivision of Infectious Diseases, Department of Medicine, Duke University School of Medicinegrid.471396.e, Durham, North Carolina, USA.ORCID 0000-0002-8742-3676
Christina A CuomoInfectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.ORCID 0000-0002-5778-960X
Duke University · USUniversity of Liverpool · GBSt George's, University of London · GBBroad Institute · USUniversity of Malawi · MWSunnybrook Health Science Centre · CAUniversity College London · GB

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI BIRREN, BRUCE W., NEAFSEY, DANIEL E · 2014 to 2024
$66.5M
Pathobiology of C. neoformans in the Central Nervous SystemR01AI073896 · NIAID · DUKE UNIVERSITY · PI PERFECT, JOHN R. · 2008 to 2018
$4.4M
Evolution of Cryptococcus neoformans Strains from Patients with HIV/AIDSR01AI093257 · NIAID · DUKE UNIVERSITY · PI PERFECT, JOHN R. · 2011 to 2022
$3.8M
Medical Research Council MR/P020526/1Medical Research Council MR/V033417/1NIAID NIH HHS R01 AI073896NIAID NIH HHS R01 AI093257NIAID NIH HHS U19 AI110818
6 · The paper itself

Abstract

Cryptococcus neoformans is the causative agent of cryptococcosis, a disease with poor patient outcomes that accounts for approximately 180,000 deaths each year. Patient outcomes may be impacted by the underlying genetics of the infecting isolate; however, our current understanding of how genetic diversity contributes to clinical outcomes is limited. Here, we leverage clinical,

Indexed as

CryptococcosisCryptococcus neoformansAnimalsDisease Models, AnimalGenome-Wide Association StudyGenomicsHumansMiceRabbitsSaccharomyces cerevisiaeSugarsVirulence FactorsSugarsVirulence FactorsaneuploidyCryptococcusgenome sequencingGWASsugar transportersvirulence

Identifiers

PMID36354332
PMCPMC9765290
OpenAlexW4308680005

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.