Evidence map›Paper›PMID 36354073›Full record

ArticleOsteoarthritis and cartilage2023

Transcriptomic analyses of joint tissues during osteoarthritis development in a rat model reveal dysregulated mechanotransduction and extracellular matrix pathways.

Y Hu, K Li, H Swahn, P Ordoukhanian, S R Head, P Natarajan, A K Woods, S B Joseph, K A Johnson, M K Lotz

Open access · bronzeAbstract read
In one paragraph

Article in Osteoarthritis and cartilage, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Y HuDepartment of Molecular Medicine, Scripps Research, La Jolla, CA, 92037, USA; Department of Radiology, Huashan Hospital, Fudan University, Shanghai, China.
K LiDepartment of Molecular Medicine, Scripps Research, La Jolla, CA, 92037, USA.
H SwahnDepartment of Molecular Medicine, Scripps Research, La Jolla, CA, 92037, USA.
P OrdoukhanianCenter for Computational Biology & Bioinformatics and Genomics Core, Scripps Research, La Jolla, CA, 92037, USA.
S R HeadCenter for Computational Biology & Bioinformatics and Genomics Core, Scripps Research, La Jolla, CA, 92037, USA.
P NatarajanCenter for Computational Biology & Bioinformatics and Genomics Core, Scripps Research, La Jolla, CA, 92037, USA.
A K WoodsCalibr, a Division of Scripps Research, La Jolla, CA, 92037, USA.
S B JosephCalibr, a Division of Scripps Research, La Jolla, CA, 92037, USA.
K A JohnsonCalibr, a Division of Scripps Research, La Jolla, CA, 92037, USA.
M K LotzDepartment of Molecular Medicine, Scripps Research, La Jolla, CA, 92037, USA. Electronic address: mlotz@scripps.edu.
Scripps Institution of Oceanography · USScripps Research Institute · US

Funding

Integrative Omics analysis of human cartilage in aging and osteoarthritisR01AG049617 · NIA · SCRIPPS RESEARCH INSTITUTE, THE · PI LOTZ, MARTIN K · 2016 to 2024
$5.6M
FoxO transcription factors in joint aging and osteoarthritis pathogenesisR37AG059418 · NIA · SCRIPPS RESEARCH INSTITUTE, THE · PI Martin K Lotz · 2018 to 2026
$5.0M
NIA NIH HHS R01 AG049617NIA NIH HHS R37 AG059418
6 · The paper itself

Abstract

objectiveTranscriptomic changes in joint tissues during the development of osteoarthritis (OA) are of interest for the discovery of biomarkers and mechanisms of disease. The objective of this study was to use the rat medial meniscus transection (MMT) model to discover stage and tissue-specific transcriptomic changes.

designSham or MMT surgeries were performed in mature rats. Cartilage, menisci and synovium were scored for histopathological changes at 2, 4 and 6 weeks post-surgery and processed for RNA-sequencing. Differentially expressed genes (DEG) were used to identify pathways and mechanisms. Published transcriptomic datasets from animal models and human OA were used to confirm and extend present findings.

resultsThe total number of DEGs was already high at 2 weeks (723 in meniscus), followed by cartilage (259) and synovium (42) and declined to varying degrees in meniscus and synovium but increased in cartilage at 6 weeks. The most upregulated genes included tenascins. The 'response to mechanical stimulus' and extracellular matrix-related pathways were enriched in both cartilage and meniscus. Pathways that were enriched in synovium at 4 weeks indicate processes related to synovial hyperplasia and fibrosis. Synovium also showed upregulation of IL-11 and several MMPs. The mechanical stimulus pathway included upregulation of the mechanoreceptors PIEZO1, PIEZO2 and TRPV4 and nerve growth factor. Analysis of data from prior RNA-sequencing studies of animal models and human OA support these findings.

conclusionThese results indicate several shared pathways that are affected during OA in cartilage and meniscus and support the role of mechanotransduction and other pathways in OA pathogenesis.

Indexed as

Cartilage, ArticularOsteoarthritisAnimalsDisease Models, AnimalExtracellular MatrixHumansIon ChannelsMechanotransduction, CellularRatsRNASynovial MembraneTranscriptomeTRPV Cation ChannelsIon ChannelsPIEZO1 protein, humanpiezo2 protein, ratRNATrpv4 protein, ratTRPV Cation ChannelsMechanotransductionOsteoarthritisRNA sequencing

Identifiers

PMID36354073
PMCPMC9892293
OpenAlexW4307723207

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.