Evidence map›Paper›PMID 36351401›Full record

ArticleCell reports2022

An epitope-enriched immunogen expands responses to a conserved viral site.

Timothy M Caradonna, Larance Ronsard, Ashraf S Yousif, Ian W Windsor, Rachel Hecht, Thalia Bracamonte-Moreno, Anne A Roffler, Max J Maron, Daniel P Maurer, Jared Feldman and 10 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 1 country.

Timothy M CaradonnaRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, USA.
Larance RonsardRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, USA.
Ashraf S YousifRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, USA.
Ian W WindsorBoston Children's Hospital, Boston, MA 02115, USA.
Rachel HechtRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, USA.
Thalia Bracamonte-MorenoRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, USA.
Anne A RofflerRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, USA.
Max J MaronRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, USA.
Daniel P MaurerRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, USA.
Jared FeldmanRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, USA.
Elisa MarchioriRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, USA.
Ralston M BarnesBristol-Myers Squibb, 700 Bay Road, Redwood City, CA 94063-2478, USA.
Daniel RohrerBristol-Myers Squibb, 700 Bay Road, Redwood City, CA 94063-2478, USA.
Nils LonbergBristol-Myers Squibb, 700 Bay Road, Redwood City, CA 94063-2478, USA.
Thomas H OguinDuke Human Vaccine Institute, Duke University School of Medicine, Durham NC 27703, USA.
Gregory D SempowskiDuke Human Vaccine Institute, Duke University School of Medicine, Durham NC 27703, USA.
Thomas B KeplerDepartment of Microbiology, Boston University School of Medicine, Boston, MA 02118, USA.
Masayuki KuraokaDepartment of Immunology, Duke University, Durham, NC 27710, USA.
Daniel LingwoodRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, USA. Electronic address: dlingwood@mgh.harvard.edu.
Aaron G SchmidtRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139, USA; Department of Microbiology, Harvard Medical School, Boston, MA 02115, USA. Electronic address: aaron.schmidt@mgh.harvard.edu.
Ragon Institute of MGH, MIT and Harvard · USBristol-Myers Squibb (United States) · USDuke University · USBoston Children's Hospital · USBoston University · USHarvard University · US

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI RAJESH T GANDHI · 2004 to 2026
$94.4M
Collaborative Influenza Vaccine Innovation Centers (CIVICs): Component A: Vaccine Center75N93019C00050 · NIAID · DUKE UNIVERSITY · PI MOODY, TONY · 2019 to 2025
$69.1M
Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Virology CoreP01AI089618 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI Sarah M Valencia · 2011 to 2026
$40.0M
Medical Scientist Training ProgramT32GM144273 · NIGMS · HARVARD MEDICAL SCHOOL · PI David Shumway Jones, Jacqueline A. Lees · 2022 to 2026
$14.7M
MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008313 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MURTHY, VENKATESH N · 1989 to 2023
$14.6M
Epitope focusing to the receptor binding motif for a universal coronavirus vaccineR01AI146779 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI SCHMIDT, AARON GREGORY · 2019 to 2023
$4.2M
Innate-like BCR activity as a template for universal vaccination against influenza virusR01AI137057 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI CHACKERIAN, BRYCE C, LINGWOOD, DANIEL · 2018 to 2022
$2.6M
Defining and Exploiting a Genetic Template for an HIV VaccineDP2DA042422 · NIDA · MASSACHUSETTS GENERAL HOSPITAL · PI LINGWOOD, DANIEL · 2016 to 2016
$2.6M
Triggering germline-encoded broadly neutralizing antibody responses against influenza virusR01AI153098 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI BATISTA, FACUNDO DAMIAN, LINGWOOD, DANIEL · 2020 to 2023
$2.1M
CDRH3-independent B cell stimulation to selectively expand VRC01 lineages from a fully humanized immunoglobulin repertoireR01AI124378 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI CHACKERIAN, BRYCE C, LINGWOOD, DANIEL · 2017 to 2020
$2.0M
Systemic coordination of pro-inflammatory immune reactions through dendritic cell-restricted sIL6R biogenesisR01AI155447 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI LINGWOOD, DANIEL · 2021 to 2025
$2.0M
NIAID NIH HHS 75N93019C00050NIAID NIH HHS P01 AI089618NIAID NIH HHS P30 AI060354NIAID NIH HHS R01 AI124378NIAID NIH HHS R01 AI137057NIAID NIH HHS R01 AI146779NIAID NIH HHS R01 AI153098NIAID NIH HHS R01 AI155447NIDA NIH HHS DP2 DA042422NIGMS NIH HHS T32 GM007753NIGMS NIH HHS T32 GM008313NIGMS NIH HHS T32 GM144273
6 · The paper itself

Abstract

Pathogens evade host humoral responses by accumulating mutations in surface antigens. While variable, there are conserved regions that cannot mutate without compromising fitness. Antibodies targeting these conserved epitopes are often broadly protective but remain minor components of the repertoire. Rational immunogen design leverages a structural understanding of viral antigens to modulate humoral responses to favor these responses. Here, we report an epitope-enriched immunogen presenting a higher copy number of the influenza hemagglutinin (HA) receptor-binding site (RBS) epitope relative to other B cell epitopes. Immunization in a partially humanized murine model imprinted with an H1 influenza shows H1-specific serum and >99% H1-specific B cells being RBS-directed. Single B cell analyses show a genetically restricted response that structural analysis defines as RBS-directed antibodies engaging the RBS with germline-encoded contacts. These data show how epitope enrichment expands B cell responses toward conserved epitopes and advances immunogen design approaches for next-generation viral vaccines.

Indexed as

Influenza, HumanInfluenza VaccinesAnimalsAntibodies, ViralEpitopes, B-LymphocyteHemagglutinin Glycoproteins, Influenza VirusHumansMiceAntibodies, ViralEpitopes, B-LymphocyteHemagglutinin Glycoproteins, Influenza VirusInfluenza Vaccinesadaptive immunityCP: Immunologyepitope enrichmenthemagglutininimmunogen designinfluenza virusprotein engineering

Identifiers

PMID36351401
PMCPMC9883670
OpenAlexW4308514107

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.