Evidence map›Paper›PMID 36351393›Full record

ArticleCell reports2022

Nucleoporins facilitate ORC loading onto chromatin.

Logan Richards, Christopher L Lord, Mary Lauren Benton, John A Capra, Jared T Nordman

Open access · goldFull text read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Nuclear transport proteins: structure, function, and disease relevance.Signal transduction and targeted therapy · 2023
    Review
  7. Review
  8. BRWD3 promotes KDM5 degradation to maintain H3K4 methylation levels.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. BRWD3 promotes KDM5 degradation to maintain H3K4 methylation levels.bioRxiv : the preprint server for biology · 2023
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Logan RichardsDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37232, USA.
Christopher L LordDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37232, USA.
Mary Lauren BentonDepartment of Computer Science, Baylor University, Waco, TX 76798, USA.
John A CapraDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37232, USA; Bakar Computational Health Sciences Institute and Department of Epidemiology and Biostatistics, UCSF, San Francisco, CA 94143, USA.
Jared T NordmanDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37232, USA. Electronic address: jared.nordman@vanderbilt.edu.
Vanderbilt University · USBaylor University · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Ben Ho Park · 1995 to 2026
$172.8M
Developmental control of replication initiation and genome stabilityR35GM128650 · NIGMS · VANDERBILT UNIVERSITY · PI Jared Nordman · 2018 to 2026
$3.3M
The Evolution of Gene Regulation and Human DiseaseR35GM127087 · NIGMS · VANDERBILT UNIVERSITY · PI John Anthony Capra · 2018 to 2026
$3.2M
Regulation of metazoan DNA replication fork progression, stability and compositioR00GM104151 · NIGMS · VANDERBILT UNIVERSITY · PI NORDMAN, JARED · 2015 to 2017
$737k
Regulation of DNA Replication Timing by Origin Recognition Complex (ORC) PhosphorylationF31GM142286 · NIGMS · VANDERBILT UNIVERSITY · PI RICHARDS, LOGAN R · 2021 to 2022
$61k
NCI NIH HHS P30 CA068485NIGMS NIH HHS F31 GM142286NIGMS NIH HHS R00 GM104151NIGMS NIH HHS R35 GM127087NIGMS NIH HHS R35 GM128650
6 · The paper itself

Abstract

The origin recognition complex (ORC) binds throughout the genome to initiate DNA replication. In metazoans, it is still unclear how ORC is targeted to specific loci to facilitate helicase loading and replication initiation. Here, we perform immunoprecipitations coupled with mass spectrometry for ORC2 in Drosophila embryos. Surprisingly, we find that ORC2 associates with multiple subunits of the Nup107-160 subcomplex of the nuclear pore. Bioinformatic analysis reveals that, relative to all modENCODE factors, nucleoporins are among the most enriched factors at ORC2 binding sites. Critically, depletion of the nucleoporin Elys, a member of the Nup107-160 complex, decreases ORC2 loading onto chromatin. Depleting Elys also sensitizes cells to replication fork stalling, which could reflect a defect in establishing dormant replication origins. Our work reveals a connection between ORC, replication initiation, and nucleoporins, suggesting a function for nucleoporins in metazoan replication initiation.

Indexed as

AquaporinsDrosophila ProteinsAnimalsChromatinDNA ReplicationDrosophilaNuclear Pore Complex ProteinsOrigin Recognition ComplexReplication OriginAquaporinsChromatinDrosophila ProteinsNuclear Pore Complex ProteinsNup107 protein, DrosophilaOrigin Recognition ComplexCP: Molecular biologyDNA replicationdrosophilagenome stabilitynuclear pore

Identifiers

PMID36351393
PMCPMC10040217
OpenAlexW4308514656

What OpenQuestion holds

Textfull text, public
LicenceCC BY
reference markers read1
measurements read98
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.