Evidence map›Paper›PMID 36350631›Full record

ArticleNucleic acids research2023

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.

Robert D Olson, Rida Assaf, Thomas Brettin, Neal Conrad, Clark Cucinell, James J Davis, Donald M Dempsey, Allan Dickerman, Emily M Dietrich, Ronald W Kenyon and 30 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 820 papers.

0numbers the graph read from it
0cells of the map it votes in
820citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

820 citing papers in PubMed.

  1. Trial
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  7. Draft genome sequence ofMicrobiology resource announcements · 2026
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  14. Identification of iron and zinc responsive TonB-dependent transporters in Pseudomonas aeruginosa.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2026
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  15. Convergent Architecture of thePathogens (Basel, Switzerland) · 2026
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  18. Soil-DerivedInternational journal of molecular sciences · 2026
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  19. Draft genome sequence of a methicillin-resistantMicrobiology resource announcements · 2026
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  20. Draft genome of a deep-seaMicrobiology resource announcements · 2026
    Article

760 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors.

Robert D OlsonConsortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.
Rida AssafDepartment of Computer Science, American University of Beirut, Beirut, Lebanon.
Thomas BrettinConsortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.
Neal ConradConsortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.
Clark CucinellUniversity of Virginia Biocomplexity Institute, Charlottesville, VA 22904, USA.
James J DavisConsortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0003-0104-5852
Donald M DempseyDepartment of Microbiology, University of Alabama at Birmingham School of Medicine, Birmingham, AL 35294, USA.
Allan DickermanUniversity of Virginia Biocomplexity Institute, Charlottesville, VA 22904, USA.ORCID 0000-0001-6018-6490
Emily M DietrichConsortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.
Ronald W KenyonUniversity of Virginia Biocomplexity Institute, Charlottesville, VA 22904, USA.
Mehmet KuscuogluDepartment of Informatics, J. Craig Venter Institute, La Jolla, CA 92037, USA.
Elliot J LefkowitzDepartment of Microbiology, University of Alabama at Birmingham School of Medicine, Birmingham, AL 35294, USA.ORCID 0000-0002-4748-4925
Jian LuJ. Craig Venter Institute, Rockville, MD 20850, USA.
Dustin MachiUniversity of Virginia Biocomplexity Institute, Charlottesville, VA 22904, USA.
Catherine MackenDepartment of Statistics, University of Auckland, Auckland, New Zealand.
Chunhong MaoUniversity of Virginia Biocomplexity Institute, Charlottesville, VA 22904, USA.
Anna NiewiadomskaDepartment of Informatics, J. Craig Venter Institute, La Jolla, CA 92037, USA.
Marcus NguyenConsortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.
Gary J OlsenDepartment of Microbiology, University of Illinois, Urbana, IL 61801, USA.
Jamie C OverbeekConsortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.
Bruce ParrelloConsortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.
Victoria ParrelloFellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA.
Jacob S PorterComputing Environment and Life Sciences, Argonne National Laboratory, Argonne, IL 60439, USA.
Gordon D PuschFellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA.
Maulik ShuklaConsortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.
Indresh SinghJ. Craig Venter Institute, Rockville, MD 20850, USA.
Lucy StewartDepartment of Informatics, J. Craig Venter Institute, La Jolla, CA 92037, USA.
Gene TanDepartment of Informatics, J. Craig Venter Institute, La Jolla, CA 92037, USA.
Chris ThomasConsortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.
Margo VanOeffelenFellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA.
Veronika VonsteinFellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA.
Zachary S WallaceDepartment of Microbiology, University of Alabama at Birmingham School of Medicine, Birmingham, AL 35294, USA.
Andrew S WarrenUniversity of Virginia Biocomplexity Institute, Charlottesville, VA 22904, USA.
Alice R WattamUniversity of Virginia Biocomplexity Institute, Charlottesville, VA 22904, USA.
Fangfang XiaConsortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0001-6567-0564
Hyunseung YooConsortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.
Yun ZhangDepartment of Informatics, J. Craig Venter Institute, La Jolla, CA 92037, USA.
Christian M ZmasekDepartment of Informatics, J. Craig Venter Institute, La Jolla, CA 92037, USA.
Richard H ScheuermannDepartment of Informatics, J. Craig Venter Institute, La Jolla, CA 92037, USA.ORCID 0000-0003-1355-892X
Rick L StevensComputing Environment and Life Sciences, Argonne National Laboratory, Argonne, IL 60439, USA.ORCID 0000-0002-4268-4020

Funding

BIOINFORMATICS RESOURCE CENTERS FOR INFECTIOUS DISEASES: SARS-CoV-2 ACTIVITIES75N93019C00076 · NIAID · UNIVERSITY OF CHICAGO · PI STEVENS, RICK · 2019 to 2023
$32.6M
Virus Taxonomy: A Community Knowledgebase Supporting Virus ResearchU24AI162625 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Elliot J. Lefkowitz · 2021 to 2026
$3.0M
NIAID NIH HHS 75N93019C00076NIAID NIH HHS U24 AI162625
6 · The paper itself

Abstract

The National Institute of Allergy and Infectious Diseases (NIAID) established the Bioinformatics Resource Center (BRC) program to assist researchers with analyzing the growing body of genome sequence and other omics-related data. In this report, we describe the merger of the PAThosystems Resource Integration Center (PATRIC), the Influenza Research Database (IRD) and the Virus Pathogen Database and Analysis Resource (ViPR) BRCs to form the Bacterial and Viral Bioinformatics Resource Center (BV-BRC) https://www.bv-brc.org/. The combined BV-BRC leverages the functionality of the bacterial and viral resources to provide a unified data model, enhanced web-based visualization and analysis tools, bioinformatics services, and a powerful suite of command line tools that benefit the bacterial and viral research communities.

Indexed as

GenomicsSoftwareVirusesBacteriaComputational BiologyDatabases, GeneticHumansInfluenza, Human

Identifiers

PMID36350631
PMCPMC9825582

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.