Evidence map›Paper›PMID 36350249›Full record

ArticleThe EMBO journal2023

An ERAD-independent role for rhomboid pseudoprotease Dfm1 in mediating sphingolipid homeostasis.

Satarupa Bhaduri, Analine Aguayo, Yusuke Ohno, Marco Proietto, Jasmine Jung, Isabel Wang, Rachel Kandel, Narinderbir Singh, Ikran Ibrahim, Amit Fulzele and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. ORMDL Proteins Turnover via Proteasome and Autophagy Is Cell-Type Dependent and Tied to Ceramide Homeostasis.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  2. Review
  3. Review
  4. Selenoprotein K at the intersection of cellular pathways.Archives of biochemistry and biophysics · 2025
    Review
  5. The Dsc complex and its role in Golgi quality control.Biochemical Society transactions · 2024
    Review
  6. Article
  7. ORMDL in metabolic health and disease.Pharmacology & therapeutics · 2023
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 3 countries.

Satarupa Bhaduri *Department of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, CA, USA.
Analine Aguayo *Department of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, CA, USA.
Yusuke OhnoLaboratory of Biochemistry, Faculty of Pharmaceutical Sciences, Hokkaido University, Sapporo, Japan.ORCID 0000-0003-3702-1043
Marco ProiettoDepartment of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, CA, USA.
Jasmine JungDepartment of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0002-9492-7100
Isabel WangDepartment of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0002-6585-1768
Rachel KandelDepartment of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, CA, USA.
Narinderbir SinghDepartment of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, CA, USA.
Ikran IbrahimDepartment of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, CA, USA.
Eric J BennettDepartment of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, CA, USA.
Akio KiharaLaboratory of Biochemistry, Faculty of Pharmaceutical Sciences, Hokkaido University, Sapporo, Japan.ORCID 0000-0001-5889-0788
Sonya E NealDepartment of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0002-9618-8428
University of California San Diego · USHokkaido University · JPInstitute of Molecular Biology · DE

Funding

Training In Cardiovascular Physiology & PharmacologyT32HL007444 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Ju Chen, Robert Scott Ross · 1985 to 2026
$11.1M
Pathways in Biological Sciences Training ProgramT32GM133351 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Matthew Daugherty, Randolph Y. Hampton · 2020 to 2026
$9.9M
UCSD PRIDE Faculty Development Program in Cardiovascular SciencesR25HL145817 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Robert Scott Ross, Joann Trejo · 2019 to 2026
$3.3M
The Discovery of Molecules and Mechanisms of the Rhomboid SuperfamilyR35GM133565 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Sonya Elina Neal · 2019 to 2026
$2.9M
Manipulating Protein Homeostasis through Specialized Quality Control RibosomesDP2GM119132 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BENNETT, ERIC J · 2015 to 2015
$2.3M
Defining the function and mechanism of regulatory ribosomal ubiquitylationR01GM136994 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BENNETT, ERIC J · 2021 to 2023
$1.1M
Howard Hughes Medical Institute GT15096NHLBI NIH HHS R25 HL145817NHLBI NIH HHS T32 HL007444NIGMS NIH HHS 1R35GM133565-01NIGMS NIH HHS 5R01GM136994-02NIGMS NIH HHS DP2GM119132NIGMS NIH HHS T32 GM133351
6 · The paper itself

Abstract

Nearly one-third of nascent proteins are initially targeted to the endoplasmic reticulum (ER), where they are correctly folded and assembled before being delivered to their final cellular destinations. To prevent the accumulation of misfolded membrane proteins, ER-associated degradation (ERAD) removes these client proteins from the ER membrane to the cytosol in a process known as retrotranslocation. Our previous work demonstrated that rhomboid pseudoprotease Dfm1 is involved in the retrotranslocation of ubiquitinated membrane integral ERAD substrates. Herein, we found that Dfm1 associates with the SPOTS complex, which is composed of serine palmitoyltransferase (SPT) enzymes and accessory components that are critical for catalyzing the first rate-limiting step of the sphingolipid biosynthesis pathway. Furthermore, Dfm1 employs an ERAD-independent role for facilitating the ER export and endosome- and Golgi-associated degradation (EGAD) of Orm2, which is a major antagonist of SPT activity. Given that the accumulation of human Orm2 homologs, ORMDLs, is associated with various pathologies, our study serves as a molecular foothold for understanding how dysregulation of sphingolipid metabolism leads to various diseases.

Indexed as

Endoplasmic Reticulum-Associated DegradationSphingolipidsHomeostasisHumansMembrane ProteinsUbiquitinMembrane ProteinsSphingolipidsUbiquitinendoplasmic reticulumERADOrm1/2rhomboid pseudoproteasesphingolipid homeostasis

Identifiers

PMID36350249
PMCPMC9929635
OpenAlexW4308636625

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.