Evidence map›Paper›PMID 36348656›Full record

ReviewEngineering in life sciences2022

Generation and evaluation of input values for computational analysis of transport processes within tissue cultures.

Ehsan Fattahi, Shahed Taheri, Arndt F Schilling, Thomas Becker, Ralf Pörtner

Abstract readReview
In one paragraph

Review in Engineering in life sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ehsan FattahiChair of Brewing and Beverage Technology TUM School of Life Sciences Technische Universität München Freising Germany.ORCID https://orcid.org/0000-0002-9189-493X
Shahed TaheriDepartment of Trauma Surgery Orthopaedics and Plastic Surgery University Medical Center Göttingen Göttingen Germany.
Arndt F SchillingDepartment of Trauma Surgery Orthopaedics and Plastic Surgery University Medical Center Göttingen Göttingen Germany.
Thomas BeckerChair of Brewing and Beverage Technology TUM School of Life Sciences Technische Universität München Freising Germany.
Ralf PörtnerInstitute of Bioprocess and Biosystems Engineering Hamburg University of Technology Hamburg Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Techniques for tissue culture have seen significant advances during the last decades and novel 3D cell culture systems have become available. To control their high complexity, experimental techniques and their Digital Twins (modelling and computational tools) are combined to link different variables to process conditions and critical process parameters. This allows a rapid evaluation of the expected product quality. However, the use of mathematical simulation and Digital Twins is critically dependent on the precise description of the problem and correct input parameters. Errors here can lead to dramatically wrong conclusions. The intention of this review is to provide an overview of the state-of-the-art and remaining challenges with respect to generating input values for computational analysis of mass and momentum transport processes within tissue cultures. It gives an overview on relevant aspects of transport processes in tissue cultures as well as modelling and computational tools to tackle these problems. Further focus is on techniques used for the determination of cell-specific parameters and characterization of culture systems, including sensors for on-line determination of relevant parameters. In conclusion, tissue culture techniques are well-established, and modelling tools are technically mature. New sensor technologies are on the way, especially for organ chips. The greatest remaining challenge seems to be the proper addressing and handling of input parameters required for mathematical models. Following Good Modelling Practice approaches when setting up and validating computational models is, therefore, essential to get to better estimations of the interesting complex processes inside organotypic tissue cultures in the future.

Indexed as

computational modelsexperimental techniquesfluidicsorganotypic tissue culturestransport processes

Identifiers

PMID36348656
PMCPMC9635004

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.