Evidence map›Paper›PMID 36348468›Full record

ArticleBMC research notes2022

The mixed liver and kidney transcriptome dataset of Darevskia valentini rock lizard.

Sergei S Ryakhovsky, Daria V Zhernakova, Vitaly I Korchagin, Andrey A Vergun, Anastasiya E Girnyk, Victoria A Dikaya, Marine S Arakelyan, Aleksey S Komissarov, Alexey P Ryskov

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC research notes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 79% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Sergei S RyakhovskyLaboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, 34/5 Vavilova Str., 119334, Moscow, Russia. Ryakhovsky@scamt-itmo.ru.ORCID http://orcid.org/0000-0001-5517-0283
Daria V ZhernakovaLaboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, 34/5 Vavilova Str., 119334, Moscow, Russia.
Vitaly I KorchaginLaboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, 34/5 Vavilova Str., 119334, Moscow, Russia.
Andrey A VergunLaboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, 34/5 Vavilova Str., 119334, Moscow, Russia.
Anastasiya E GirnykLaboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, 34/5 Vavilova Str., 119334, Moscow, Russia.
Victoria A DikayaApplied Genomics Laboratory, SCAMT Institute, ITMO University, 9 Lomonosova Str, 197101, Saint Petersburg, Russia.
Marine S ArakelyanFaculty of Biology, Yerevan State University, 1 Alex Manoogian, 0025, Yerevan, Armenia.
Aleksey S KomissarovLaboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, 34/5 Vavilova Str., 119334, Moscow, Russia.
Alexey P RyskovLaboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, 34/5 Vavilova Str., 119334, Moscow, Russia.
ITMO University · RUInstitute of Gene Biology · RUMoscow State Pedagogical University · RUYerevan State University · AM

Funding

Russian Science Foundation 19-14-00083
6 · The paper itself

Abstract

objectivesThis study is performed in the frame of a bigger study dedicated to genomics and transcriptomics of parthenogenesis in vertebrates. Among vertebrates, obligate parthenogenesis was first described in the lizards of the genus Darevskia. In this genus, all found parthenogenetic species originated via interspecific hybridization. It remains unknown which genetic or genomic factors play a key role in the generation of parthenogenetic organisms. Comparative genomic and transcriptomic analysis of parthenogens and their parental species may elucidate this problem. Darevskia valentini is a paternal species for four (of seven) parthenogens of this genus, which we promote as a particularly important species for the generation of parthenogenetic forms. DATA DESCRIPTION: Total cellular RNA was isolated from kidney and liver tissues using the standard Trizol Tissue RNA Extraction protocol. Sequencing of transcriptome libraries prepared by random fragmentation of cDNA samples was performed on an Illumina HiSeq2500. Obtained raw sequences contained 117,6 million reads with the GC content of 47%. After preprocessing, raw data was assembled by Trinity and produced 491,482 contigs.

Indexed as

LizardsAnimalsKidneyLiverParthenogenesisRNATranscriptomeRNACaucasian rock lizardsDarevskia valentinigenus Darevskiainterspecific hybridizationparthenogenesistranscriptome assembly

Identifiers

PMID36348468
PMCPMC9644632
OpenAlexW4308572402

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.