Evidence map›Paper›PMID 36348233›Full record

ArticleJournal of neurovirology2023

Neuroimaging and immunological features of neurocognitive function related to substance use in people with HIV.

David M Murdoch, Richard Barfield, Cliburn Chan, Sheri L Towe, Ryan P Bell, Alicia Volkheimer, Joyce Choe, Shana A Hall, Miles Berger, Jichun Xie and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of neurovirology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 3 pooled it
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 3 syntheses or guidelines pooled it, 8 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

David M MurdochDepartment of Medicine, Duke University Medical Center, DUMC Box 2629, Durham, NC, 27710, USA. david.murdoch@duke.edu.ORCID 0000-0001-7201-7950
Richard BarfieldDepartment of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC, USA.
Cliburn ChanDepartment of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC, USA.
Sheri L ToweDepartment of Psychiatry & Behavioral Sciences, Duke University Medical Center, Durham, NC, USA.
Ryan P BellDepartment of Psychiatry & Behavioral Sciences, Duke University Medical Center, Durham, NC, USA.
Alicia VolkheimerDepartment of Medicine, Duke University Medical Center, DUMC Box 2629, Durham, NC, 27710, USA.
Joyce ChoeDepartment of Medicine, Duke University Medical Center, DUMC Box 2629, Durham, NC, 27710, USA.
Shana A HallDepartment of Psychiatry & Behavioral Sciences, Duke University Medical Center, Durham, NC, USA.
Miles BergerDepartment of Anesthesiology, Duke University Medical Center, Durham, NC, USA.
Jichun XieDepartment of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC, USA.
Christina S MeadeDepartment of Psychiatry & Behavioral Sciences, Duke University Medical Center, Durham, NC, USA.
Duke Medical Center · USDuke University · US

Funding

Support for QA/QC for Prior Approval ProcessUL1TR002553 · NCATS · DUKE UNIVERSITY · PI LI, JENNIFER S, MCNAMARA, JAMES O. · 2018 to 2023
$58.5M
Social and Behavioral Sciences CoreP30AI064518 · NIAID · DUKE UNIVERSITY · PI Nwora Lance Okeke · 2005 to 2026
$50.5M
A Systems Biology Approach to HIV-associated Neurocognitive Impairment: Role of Drug Abuse and NeuroinflammationR01DA043241 · NIDA · DUKE UNIVERSITY · PI MEADE, CHRISTINA S, MURDOCH, DAVID MARTIN · 2016 to 2020
$3.4M
NCATS NIH HHS UL1 TR002553NIAID NIH HHS P30 AI064518NIDA NIH HHS R01 DA043241
6 · The paper itself

Abstract

This study sought to identify neuroimaging and immunological factors associated with substance use and that contribute to neurocognitive impairment (NCI) in people with HIV (PWH). We performed cross-sectional immunological phenotyping, neuroimaging, and neurocognitive testing on virally suppressed PWH in four substance groups: cocaine only users (COC), marijuana only users (MJ), dual users (Dual), and Non-users. Participants completed substance use assessments, multimodal MRI brain scan, neuropsychological testing, and blood and CSF sampling. We employed a two-stage analysis of 305 possible biomarkers of cognitive function associated with substance use. Feature reduction (Kruskal Wallis p-value < 0.05) identified 53 biomarkers associated with substance use (22 MRI and 31 immunological) for model inclusion along with clinical and demographic variables. We employed eXtreme Gradient Boosting (XGBoost) with these markers to predict cognitive function (global T-score). SHapley Additive exPlanations (SHAP) values were calculated to rank features for impact on model output and NCI. Participants were 110 PWH with sustained HIV viral suppression (33 MJ, 12 COC, 22 Dual, and 43 Non-users). The ten highest ranking biomarkers for predicting global T-score were 4 neuroimaging biomarkers including functional connectivity, gray matter volume, and white matter integrity; 5 soluble biomarkers (plasma glycine, alanine, lyso-phosphatidylcholine (lysoPC) aC17.0, hydroxy-sphingomyelin (SM.OH) C14.1, and phosphatidylcholinediacyl (PC aa) C28.1); and 1 clinical variable (nadir CD4 count). The results of our machine learning model suggest that substance use may indirectly contribute to NCI in PWH through both metabolomic and neuropathological mechanisms.

Indexed as

HIV InfectionsSubstance-Related DisordersCognitionCross-Sectional StudiesHumansNeuroimagingBiomarkersHANDHIV infectionImmunologyNeuroimagingSubstance use

Identifiers

PMID36348233
PMCPMC10089970
OpenAlexW4308573176

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.