Evidence map›Paper›PMID 36347951›Full record

ArticleCommunications biology2022

Matching amino acids membrane preference profile to improve activity of antimicrobial peptides.

Shanghyeon Kim, Jaehoo Lee, Sol Lee, Hyein Kim, Ji-Yeong Sim, Boryeong Pak, Kyeongmin Kim, Jae Il Kim

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Shanghyeon KimSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea.ORCID 0000-0002-8892-8676
Jaehoo LeeSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea.
Sol LeeSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea.
Hyein KimSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea.
Ji-Yeong SimSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea.
Boryeong PakSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea.
Kyeongmin KimDepartment of Microbiology, School of Medicine, Kyungpook National University, 680 Gukchaebosangro, Jung-gu, Daegu, 41944, Korea.
Jae Il KimSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea. jikim@gist.ac.kr.ORCID 0000-0001-7546-5505
Gwangju Institute of Science and Technology · KRKyungpook National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antimicrobial peptides (AMPs) are cationic antibiotics that can kill multidrug-resistant bacteria via membrane insertion. However, their weak activity limits their clinical use. Ironically, the cationic charge of AMPs is essential for membrane binding, but it obstructs membrane insertion. In this study, we postulate that this problem can be overcome by locating cationic amino acids at the energetically preferred membrane surface. All amino acids have an energetically preferred or less preferred membrane position profile, and this profile is strongly related to membrane insertion. However, most AMPs do not follow this profile. One exception is protegrin-1, a powerful but neglected AMP. In the present study, we found that a potent AMP, WCopW5, strongly resembles protegrin-1 and that the match between its sequence and the preferred position profile closely correlates with its antimicrobial activity. One of its derivatives, WCopW43, has antimicrobial activity comparable to that of the most effective AMPs in clinical use.

Indexed as

Amino AcidsAntimicrobial PeptidesAnti-Bacterial AgentsCationsAmino AcidsAnti-Bacterial AgentsAntimicrobial PeptidesCations

Identifiers

PMID36347951
PMCPMC9643456
OpenAlexW4308590526

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.