Evidence map›Paper›PMID 36346822›Full record

ArticlePLoS computational biology2022

A structural dynamics model for how CPEB3 binding to SUMO2 can regulate translational control in dendritic spines.

Xinyu Gu, Nicholas P Schafer, Carlos Bueno, Wei Lu, Peter G Wolynes

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Role of CPEBs in Learning and Memory.Journal of neurochemistry · 2025
    Review
  4. Review
  5. SUMOylation and Major Depressive Disorder.International journal of molecular sciences · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xinyu GuCenter for Theoretical Biological Physics, Rice University, Houston, Texas, United States of America.
Nicholas P SchaferCenter for Theoretical Biological Physics, Rice University, Houston, Texas, United States of America.
Carlos BuenoCenter for Theoretical Biological Physics, Rice University, Houston, Texas, United States of America.
Wei LuCenter for Theoretical Biological Physics, Rice University, Houston, Texas, United States of America.
Peter G WolynesCenter for Theoretical Biological Physics, Rice University, Houston, Texas, United States of America.ORCID 0000-0001-7975-9287
Center for Theoretical Biological Physics · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A prion-like RNA-binding protein, CPEB3, can regulate local translation in dendritic spines. CPEB3 monomers repress translation, whereas CPEB3 aggregates activate translation of its target mRNAs. However, the CPEB3 aggregates, as long-lasting prions, may raise the problem of unregulated translational activation. Here, we propose a computational model of the complex structure between CPEB3 RNA-binding domain (CPEB3-RBD) and small ubiquitin-like modifier protein 2 (SUMO2). Free energy calculations suggest that the allosteric effect of CPEB3-RBD/SUMO2 interaction can amplify the RNA-binding affinity of CPEB3. Combining with previous experimental observations on the SUMOylation mode of CPEB3, this model suggests an equilibrium shift of mRNA from binding to deSUMOylated CPEB3 aggregates to binding to SUMOylated CPEB3 monomers in basal synapses. This work shows how a burst of local translation in synapses can be silenced following a stimulation pulse, and explores the CPEB3/SUMO2 interplay underlying the structural change of synapses and the formation of long-term memories.

Indexed as

Dendritic SpinesPrionsRNA-Binding ProteinsRNA, MessengerRNA Recognition MotifPrionsRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID36346822
PMCPMC9674179
OpenAlexW4308532279

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.