Evidence map›Paper›PMID 36346579›Full record

ArticleMolecular biotechnology2023

Identification and Preliminary Characterization of a Novel Single-Stranded DNA Binding Protein of Staphylococcus aureus Phage Phi11 Expressed in Escherichia coli.

Vivek Ratre, Vijay Hemmadi, Sumit Biswas, Malabika Biswas

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular biotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Vivek RatreDepartment of Biological Sciences, BITS Pilani, K. K. Birla, Goa Campus, NH17B, Zuarinagar, , Goa, 403726, India.ORCID http://orcid.org/0000-0002-3347-2886
Vijay HemmadiDepartment of Biological Sciences, BITS Pilani, K. K. Birla, Goa Campus, NH17B, Zuarinagar, , Goa, 403726, India.ORCID http://orcid.org/0000-0002-8169-6817
Sumit BiswasVISTA Lab, BITS Pilani, K. K. Birla, Goa Campus, Zuarinagar, Goa, India.
Malabika BiswasDepartment of Biological Sciences, BITS Pilani, K. K. Birla, Goa Campus, NH17B, Zuarinagar, , Goa, 403726, India. mbiswas@goa.bits-pilani.ac.in.ORCID http://orcid.org/0000-0002-2497-9765
Birla Institute of Technology and Science, Pilani · IN

Funding

SCIENCE AND ENGINEERING RESEARCH BOARD CRG/2020/004968
6 · The paper itself

Abstract

Bacteriophage Phi11 harbors a gene, gp13, encoding the putative SSB protein (GenBank accession no. NC_004615.1). SSB proteins bind to and protect the single-stranded DNA molecules from nuclease digestion and are essential for the growth and metabolic activities of the organisms encoding them. In this investigation, we have carried out the cloning, recombinant expression, and purification of rGp13 for the first time in Escherichia coli. EMSA data indicated that the purified recombinant Gp13 protein was capable of binding to single-stranded DNA. The protein exhibited maximum binding activity at 32 °C. Furthermore, our bioinformatic analysis has revealed that Gp13 consists of an OB-fold, a characteristic of SSB proteins. However, the arrangement of the OB-fold is unique, being located in the C-terminal domain of Gp13. Despite the importance of SSB proteins in various metabolic processes as well as in various types of PCR, there are no reports on the purification and characterization of SSB proteins from staphylococcal bacteriophages. We expect that the purification and characterization of recombinant Gp13 will help us gain a better insight into its biological activity and make it available in large quantities for molecular biology work.

Indexed as

BacteriophagesEscherichia coliDNA-Binding ProteinsDNA, Single-StrandedProtein BindingRecombinant ProteinsStaphylococcus aureusDNA-Binding ProteinsDNA, Single-StrandedRecombinant ProteinsDimerDissociation constantGel shift assayGp13OB-foldSSBThermolabile

Identifiers

PMID36346579
OpenAlexW4308555190

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.