Evidence map›Paper›PMID 36344631›Full record

ArticleCommunications biology2022

An LH1-RC photocomplex from an extremophilic phototroph provides insight into origins of two photosynthesis proteins.

Kazutoshi Tani, Ryo Kanno, Keigo Kurosawa, Shinichi Takaichi, Kenji V P Nagashima, Malgorzata Hall, Long-Jiang Yu, Yukihiro Kimura, Michael T Madigan, Akira Mizoguchi and 2 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Primary production by the purple nonsulfur bacteriumApplied and environmental microbiology · 2025
    Article
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  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 3 countries.

Kazutoshi Tani *Graduate School of Medicine, Mie University, Tsu, 514-8507, Japan. ktani@doc.medic.mie-u.ac.jp.ORCID 0000-0003-4835-154X
Ryo Kanno *Imaging Section, Research Support Division, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-son, Kunigami-gun, Okinawa, 904-0495, Japan.
Keigo KurosawaFaculty of Science, Ibaraki University, Mito, 310-8512, Japan.
Shinichi TakaichiDepartment of Molecular Microbiology, Faculty of Science, Tokyo University of Agriculture, Sakuragaoka, Setagaya, Tokyo, 156-8502, Japan.ORCID 0000-0002-1621-9141
Kenji V P NagashimaResearch Institute for Integrated Science, Kanagawa University, 2946 Tsuchiya, Hiratsuka, Kanagawa, 259-1293, Japan.
Malgorzata HallImaging Section, Research Support Division, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-son, Kunigami-gun, Okinawa, 904-0495, Japan.
Long-Jiang YuPhotosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, 100093, Beijing, China.ORCID 0000-0002-4962-1049
Yukihiro KimuraDepartment of Agrobioscience, Graduate School of Agriculture, Kobe University, Nada, Kobe, 657-8501, Japan.ORCID 0000-0003-3747-0367
Michael T MadiganSchool of Biological Sciences, Department of Microbiology, Southern Illinois University, Carbondale, IL, 62901, USA.
Akira MizoguchiGraduate School of Medicine, Mie University, Tsu, 514-8507, Japan.
Bruno M HumbelImaging Section, Research Support Division, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-son, Kunigami-gun, Okinawa, 904-0495, Japan.
Zheng-Yu Wang-OtomoFaculty of Science, Ibaraki University, Mito, 310-8512, Japan. wang@ml.ibaraki.ac.jp.ORCID 0000-0003-1676-2002
Okinawa Institute of Science and Technology Graduate University · JPIbaraki University · JPMie University · JPChinese Academy of Sciences · CNKanagawa University · JPKobe University · JPSouthern Illinois University Carbondale · USTokyo University of Agriculture · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rhodopila globiformis is the most acidophilic of anaerobic purple phototrophs, growing optimally in culture at pH 5. Here we present a cryo-EM structure of the light-harvesting 1-reaction center (LH1-RC) complex from Rhodopila globiformis at 2.24 Å resolution. All purple bacterial cytochrome (Cyt, encoded by the gene pufC) subunit-associated RCs with known structures have their N-termini truncated. By contrast, the Rhodopila globiformis RC contains a full-length tetra-heme Cyt with its N-terminus embedded in the membrane forming an α-helix as the membrane anchor. Comparison of the N-terminal regions of the Cyt with PufX polypeptides widely distributed in Rhodobacter species reveals significant structural similarities, supporting a longstanding hypothesis that PufX is phylogenetically related to the N-terminus of the RC-bound Cyt subunit and that a common ancestor of phototrophic Proteobacteria contained a full-length tetra-heme Cyt subunit that evolved independently through partial deletions of its pufC gene. Eleven copies of a novel γ-like polypeptide were also identified in the bacteriochlorophyll a-containing Rhodopila globiformis LH1 complex; γ-polypeptides have previously been found only in the LH1 of bacteriochlorophyll b-containing species. These features are discussed in relation to their predicted functions of stabilizing the LH1 structure and regulating quinone transport under the warm acidic conditions.

Indexed as

ExtremophilesRhodobacter sphaeroidesAcetobacteraceaeBacterial ProteinsHemeLight-Harvesting Protein ComplexesModels, MolecularPeptidesPhotosynthesisProteobacteriaBacterial ProteinsHemeLight-Harvesting Protein ComplexesPeptides

Identifiers

PMID36344631
PMCPMC9640540
OpenAlexW4308426174

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.