Evidence map›Paper›PMID 36344500›Full record

ArticleNature communications2022

DNA barcoding reveals ongoing immunoediting of clonal cancer populations during metastatic progression and immunotherapy response.

Louise A Baldwin, Nenad Bartonicek, Jessica Yang, Sunny Z Wu, Niantao Deng, Daniel L Roden, Chia-Ling Chan, Ghamdan Al-Eryani, Damien J Zanker, Belinda S Parker and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

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  11. Clonal tracking in cancer and metastasis.Cancer metastasis reviews · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Louise A BaldwinCancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.ORCID 0000-0002-2226-2154
Nenad BartonicekCancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.
Jessica YangCancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.ORCID 0000-0003-1513-7942
Sunny Z WuCancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.ORCID 0000-0002-6153-0449
Niantao DengCancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.
Daniel L RodenCancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.ORCID 0000-0003-2393-5805
Chia-Ling ChanCancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.ORCID 0000-0003-2079-9262
Ghamdan Al-EryaniCancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.ORCID 0000-0002-1137-1726
Damien J ZankerSir Peter MacCallum Department of Oncology, University of Melbourne, Parkville, VIC, 3010, Australia.
Belinda S ParkerSir Peter MacCallum Department of Oncology, University of Melbourne, Parkville, VIC, 3010, Australia.
Alexander SwarbrickCancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia. a.swarbrick@garvan.org.au.ORCID 0000-0002-3051-5676
Simon JunankarCancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.ORCID 0000-0002-3965-8278
Garvan Institute of Medical Research · AUThe University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cancers evade the immune system through the process of cancer immunoediting. While immune checkpoint inhibitors are effective for reactivating tumour immunity in some cancer types, many other solid cancers, including breast cancer, remain largely non-responsive. Understanding how non-responsive cancers evade immunity and whether this occurs at the clonal level will improve immunotherapeutic design. Here we use DNA barcoding to track murine mammary cancer cell clones during immunoediting and determine clonal transcriptional profiles that allow immune evasion following anti-PD1 plus anti-CTLA4 immunotherapy. Clonal diversity is significantly restricted by immunotherapy treatment in both primary tumours and metastases, demonstrating selection for pre-existing breast cancer cell populations and ongoing immunoediting during metastasis and treatment. Immunotherapy resistant clones express a common gene signature associated with poor survival of basal-like breast cancer patient cohorts. At least one of these genes has an existing small molecule that can potentially be used to improve immunotherapy response.

Indexed as

Breast NeoplasmsDNA Barcoding, TaxonomicAnimalsFemaleHumansImmunologic FactorsImmunotherapyLongitudinal StudiesMiceImmunologic Factors

Identifiers

PMID36344500
PMCPMC9640547
OpenAlexW4308440252

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.