Evidence map›Paper›PMID 36343269›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

A Bayesian switching linear dynamical system for estimating seizure chronotypes.

Emily T Wang, Marina Vannucci, Zulfi Haneef, Robert Moss, Vikram R Rao, Sharon Chiang

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Spectral learning of Bernoulli linear dynamical systems models.Transactions on machine learning research · 2023
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Emily T WangDepartment of Statistics, Rice University, Houston, TX 77005.ORCID 0000-0001-9178-9227
Marina VannucciDepartment of Statistics, Rice University, Houston, TX 77005.ORCID 0000-0002-7360-5321
Zulfi HaneefDepartment of Neurology, Baylor College of Medicine, Houston, TX 77030.ORCID 0000-0002-0720-1417
Robert MossSeizure Tracker LLC, Springfield, VA 22151.ORCID 0000-0002-9407-5681
Vikram R RaoDepartment of Neurology, University of California, San Francisco, CA 94115.ORCID 0000-0002-6389-2638
Sharon ChiangDepartment of Neurology, University of California, San Francisco, CA 94115.ORCID 0000-0002-4548-4550
Rice University · USUniversity of California, San Francisco · USBaylor College of Medicine · US

Funding

TRAINING PROGRAM IN COMPUTATIONAL BIOLOGY AND MEDICINET15LM007093 · NLM · RICE UNIVERSITY · PI Lydia E. Kavraki · 1992 to 2026
$20.8M
NINDS Research Education Programs for Residents and Fellows in Neurology, Neurosurgery, Neuropathology, Neuroradiology and Emergency Medicine (R25)R25NS070680 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOSEPHSON, SCOTT ANDREW · 2010 to 2023
$6.8M
HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) 5R25NS070680-12HHS | NIH | U.S. National Library of Medicine (NLM) T15LM007093NINDS NIH HHS R25 NS070680NLM NIH HHS T15 LM007093
6 · The paper itself

Abstract

Epilepsy is a disorder characterized by paroxysmal transitions between multistable states. Dynamical systems have been useful for modeling the paroxysmal nature of seizures. At the same time, intracranial electroencephalography (EEG) recordings have recently discovered that an electrographic measure of epileptogenicity, interictal epileptiform activity, exhibits cycling patterns ranging from ultradian to multidien rhythmicity, with seizures phase-locked to specific phases of these latent cycles. However, many mechanistic questions about seizure cycles remain unanswered. Here, we provide a principled approach to recast the modeling of seizure chronotypes within a statistical dynamical systems framework by developing a Bayesian switching linear dynamical system (SLDS) with variable selection to estimate latent seizure cycles. We propose a Markov chain Monte Carlo algorithm that employs particle Gibbs with ancestral sampling to estimate latent cycles in epilepsy and apply unsupervised learning on spectral features of latent cycles to uncover clusters in cycling tendency. We analyze the largest database of patient-reported seizures in the world to comprehensively characterize multidien cycling patterns among 1,012 people with epilepsy, spanning from infancy to older adulthood. Our work advances knowledge of cycling in epilepsy by investigating how multidien seizure cycles vary in people with epilepsy, while demonstrating an application of an SLDS to frame seizure cycling within a nonlinear dynamical systems framework. It also lays the groundwork for future studies to pursue data-driven hypothesis generation regarding the mechanistic drivers of seizure cycles.

Indexed as

ElectroencephalographyEpilepsyAgedBayes TheoremHumansNonlinear DynamicsSeizuresBayesian inferencechronotypesdynamical systemsepilepsyMarkov chain Monte Carloseizure cyclingseizuresspectral analysis

Identifiers

PMID36343269
PMCPMC9674238
OpenAlexW4308430540

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.