Evidence map›Paper›PMID 36340400›Full record

ArticleFrontiers in plant science2022

Response of Southeast Asian rice root architecture and anatomy phenotypes to drought stress.

Jonaliza L Siangliw, Burin Thunnom, Mignon A Natividad, Marinell R Quintana, Dmytro Chebotarov, Kenneth L McNally, Jonathan P Lynch, Kathleen M Brown, Amelia Henry

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Jonaliza L SiangliwNational Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, Thailand.
Burin ThunnomNational Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, Thailand.
Mignon A NatividadRice Breeding Innovations Platform, International Rice Research Institute, Los Baños, Philippines.
Marinell R QuintanaRice Breeding Innovations Platform, International Rice Research Institute, Los Baños, Philippines.
Dmytro ChebotarovRice Breeding Innovations Platform, International Rice Research Institute, Los Baños, Philippines.
Kenneth L McNallyRice Breeding Innovations Platform, International Rice Research Institute, Los Baños, Philippines.
Jonathan P LynchDepartment of Plant Science, The Pennsylvania State University, University Park, PA, United States.
Kathleen M BrownDepartment of Plant Science, The Pennsylvania State University, University Park, PA, United States.
Amelia HenryRice Breeding Innovations Platform, International Rice Research Institute, Los Baños, Philippines.
International Rice Research Institute · PHNational Science and Technology Development Agency · THPennsylvania State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Drought stress in Southeast Asia greatly affects rice production, and the rice root system plays a substantial role in avoiding drought stress. In this study, we examined the phenotypic and genetic correlations among root anatomical, morphological, and agronomic phenotypes over multiple field seasons. A set of >200 rice accessions from Southeast Asia (a subset of the 3000 Rice Genomes Project) was characterized with the aim to identify root morphological and anatomical phenotypes related to productivity under drought stress. Drought stress resulted in slight increases in the basal metaxylem and stele diameter of nodal roots. Although few direct correlations between root phenotypes and grain yield were identified, biomass was consistently positively correlated with crown root number and negatively correlated with stele diameter. The accessions with highest grain yield were characterized by higher crown root numbers and median metaxylem diameter and smaller stele diameter. Genome-wide association study (GWAS) revealed 162 and 210 significant SNPs associated with root phenotypes in the two seasons which resulted in identification of 59 candidate genes related to root development. The gene

Indexed as

droughtGWASriceroot anatomyroot architecture

Identifiers

PMID36340400
PMCPMC9629509
OpenAlexW4306849708

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.