Evidence map›Paper›PMID 36338309›Full record

ArticleAdvanced materials technologies2022

Gold Nanoparticle-Labeled CRISPR-Cas13a Assay for the Sensitive Solid-State Nanopore Molecular Counting.

Li Liu, Zhiheng Xu, Kamel Awayda, Stephen J Dollery, Mengdi Bao, Jianlin Fan, Denis Cormier, Mitchell O'Connell, Gregory J Tobin, Ke Du

Open access · greenAbstract read
In one paragraph

Article in Advanced materials technologies, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Li LiuDepartment of Microsystems Engineering, Rochester Institute of Technology, Rochester, NY 14623, USA.
Zhiheng XuDepartment of Industrial & Systems Engineering, Rochester Institute of Technology, Rochester, NY 14623, USA.
Kamel AwaydaDepartment of Biochemistry and Biophysics, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642, USA.
Stephen J DolleryBiological Mimetics, Inc., 124 Byte Drive, Frederick, MD 21702, USA.
Mengdi BaoDepartment of Mechanical Engineering, Rochester Institute of Technology, Rochester, NY 14623, USA.
Jianlin FanInstitute of Semiconductors, Guangdong Academy of Sciences, Guangzhou, 510651, China.
Denis CormierDepartment of Industrial & Systems Engineering, Rochester Institute of Technology, Rochester, NY 14623, USA.
Mitchell O'ConnellDepartment of Biochemistry and Biophysics, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642, USA.
Gregory J TobinBiological Mimetics, Inc., 124 Byte Drive, Frederick, MD 21702, USA.
Ke DuDepartment of Microsystems Engineering, Rochester Institute of Technology, Rochester, NY 14623, USA.
Rochester Institute of Technology · USBiological Mimetics (United States) · USUniversity of Rochester · USGuangdong Academy of Sciences · CN

Funding

The University of Rochester's Clinical and Translational Science InstituteUL1TR002001 · NCATS · UNIVERSITY OF ROCHESTER · PI WILSON, KAREN M., ZAND, MARTIN S · 2016 to 2024
$34.6M
Programmable RNA-targeting CRISPR-Cas tools to study RNA biologyR35GM133462 · NIGMS · UNIVERSITY OF ROCHESTER · PI Mitchell O'Connell · 2019 to 2026
$3.6M
Understand and Detect Sepsis: Pathogen Isolation, Biochemistry Assay, and Optofluidic SensingR35GM142763 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI DU, KE · 2021 to 2025
$2.0M
NIGMS NIH HHS R35 GM133462NIGMS NIH HHS R35 GM142763
6 · The paper itself

Abstract

A gold nanoparticle (AuNP) labeled CRISPR-Cas13a nucleic acid assay has been developed for sensitive solid-state nanopore sensing. Instead of directly detecting the translocation of RNA through a nanopore, our system utilizes non-covalent conjugates of AuNPs and RNA targets. Upon CRISPR activation, the AuNPs are liberated from the RNA, isolated, and passed through a nanopore sensor. Detection of the AuNPs can be observed as increasing ionic current in the chip. Each AuNP that is detected is enumerated as an event, leading to quantitative of molecular targets. Leveraging the high signal-to-noise ratio enabled by the AuNPs, a detection limit of 50 fM before front-end target amplification is achieved using SARS-CoV-2 RNA segments as a Cas13 target. Furthermore, a dynamic range of six orders of magnitude is demonstrated for quantitative RNA sensing. This simplified AuNP-based CRISPR assay is performed at the physiological temperature without relying on thermal cyclers. In addition, the nanopore reader is similar in size to a smartphone, making the assay system suitable for rapid and portable nucleic acid biomarker detection in either low-resource settings or hospitals.

Indexed as

biosensingCRISPR-Cas13adiagnosticsnanoporepoint-of-care

Identifiers

PMID36338309
PMCPMC9632472
OpenAlexW4206963500

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.