Evidence map›Paper›PMID 36338035›Full record

ArticleFrontiers in microbiology2022

The transcriptional characteristics of NADC34-like PRRSV in porcine alveolar macrophages.

Peixin Wang, Xin Ma, Riteng Zhang, Yongxin Zhao, Ruochen Hu, Chen Luo, Basit Zeshan, Zengqi Yang, Li Qiu, Juan Wang and 3 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Peixin WangCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Xin MaCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Riteng ZhangCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Yongxin ZhaoCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Ruochen HuCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Chen LuoCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Basit ZeshanFaculty of Sustainable Agriculture, Universiti Malaysia Sabah, Sandakan, Sabah, Malaysia.
Zengqi YangCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Li QiuCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Juan WangCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Haijin LiuCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.
Yefei ZhouDepartment of Life Science, Nanjing Xiaozhuang University, Nanjing, Jiangsu, China.
Xinglong WangCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The widespread and endemic circulation of porcine reproductive and respiratory syndrome virus (PRRSV) cause persistent financial losses to the swine industry worldwide. In 2017, NADC34-like PRRSV-2 emerged in northeastern China and spread rapidly. The dynamics analysis of immune perturbations associated with novel PRRSV lineage is still incomplete. This study performed a time-course transcriptome sequencing of NADC34-like PRRSV strain YC-2020-infected porcine alveolar macrophages (PAMs) and compared them with JXA1-infected PAMs. The results illustrated dramatic changes in the host's differentially expressed genes (DEGs) presented at different timepoints after PRRSV infection, and the expression profile of YC-2020 group is distinct from that of JXA1 group. Functional enrichment analysis showed that the expression of many inflammatory cytokines was up-regulated following YC-2020 infection but at a significantly lower magnitude than JXA1 group, in line with the trends for most interferon-stimulated genes (ISGs) and their regulators. Meanwhile, numerous components of histocompatibility complex (MHC) class II and phagosome presented a stronger transcription suppression after the YC-2020 infection. All results imply that YC-2020 may induce milder inflammatory responses, weaker antiviral processes, and more severe disturbance of antigen processing and presentation compared with HP-PRRSV. Additionally,

Indexed as

comparative transcriptomeNADC34-likePRRSVtime-course transcriptomeWGCNA

Identifiers

PMID36338035
PMCPMC9629508

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.