Evidence map›Paper›PMID 36337771›Full record

ArticleAfrican journal of laboratory medicine2022

Molecular detection of hepatitis B virus genotype E with immune escape mutations in chronic hepatitis B patients on long-term antiviral therapy in Jos, Nigeria.

Joseph Anejo-Okopi, Edith Okeke, Pantong M Davwar, Chika Onwuamah, Harris Onywera, Patience Omaiye, Mary Duguru, Ocheme J Okojokwu, Otobo I Ujah, Bulus Jonathan and 12 more

Open access · diamondAbstract read
In one paragraph

Article in African journal of laboratory medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 12 institutions in 5 countries.

Joseph Anejo-OkopiDepartment of Microbiology, University of Jos, Jos, Nigeria.ORCID https://orcid.org/0000-0003-1372-0608
Edith OkekeDepartment of Internal Medicine, University of Jos, Jos University Teaching Hospital, Jos, Nigeria.ORCID https://orcid.org/0000-0002-9278-1646
Pantong M DavwarDepartment of Internal Medicine, University of Jos, Jos University Teaching Hospital, Jos, Nigeria.ORCID https://orcid.org/0000-0003-0006-9123
Chika OnwuamahCenter for Human Virology and Genomics Nigeria Institute of Medical Research, Lagos, Nigeria.ORCID https://orcid.org/0000-0002-5111-1822
Harris OnyweraInstitute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.ORCID https://orcid.org/0000-0002-7298-4921
Patience OmaiyeDepartment of Internal Medicine, University of Jos, Jos University Teaching Hospital, Jos, Nigeria.ORCID https://orcid.org/0000-0003-3545-0020
Mary DuguruDepartment of Internal Medicine, University of Jos, Jos University Teaching Hospital, Jos, Nigeria.ORCID https://orcid.org/0000-0003-0197-0781
Ocheme J OkojokwuDepartment of Microbiology, University of Jos, Jos, Nigeria.ORCID https://orcid.org/0000-0001-8003-4363
Otobo I UjahDepartment of Community and Family Health, College of Public Health, University of South Florida, Tampa, Florida, United States.ORCID https://orcid.org/0000-0002-9899-9013
Bulus JonathanDepartment of Family Medicine, Plateau State Specialist Hospital, Jos, Nigeria.ORCID https://orcid.org/0000-0002-5289-0418
Chima A GeorgeDepartment of Family Medicine, Bingham University Teaching Hospital, Jos, Nigeria.ORCID https://orcid.org/0000-0002-5688-1359
Ramyil S CrownDepartment of Medical Microbiology and Parasitology, Bingham University Teaching Hospital, Jos, Nigeria.ORCID https://orcid.org/0000-0002-3872-3525
Fiyaktu B YakubuDepartment of Chemical Pathology, Jos University Teaching Hospital, Jos, Nigeria.ORCID https://orcid.org/0000-0001-9340-8694
Judith O SokeiCenter for Human Virology and Genomics Nigeria Institute of Medical Research, Lagos, Nigeria.ORCID https://orcid.org/0000-0003-2206-557X
Leona C OkoliCenter for Human Virology and Genomics Nigeria Institute of Medical Research, Lagos, Nigeria.ORCID https://orcid.org/0000-0002-0837-8468
Onyemocho AuduDepartment of Epidemiology and Community Health, Benue State University, Makurdi, Nigeria.ORCID https://orcid.org/0000-0002-9840-5158
Seth C InzauleDepartment of HIV and Global Hepatitis Program, World Health Organization, Geneva, Switzerland.ORCID https://orcid.org/0000-0002-0155-7391
Isaac O AbahDepartment of Pharmacology, University of Jos, Jos University Teaching Hospital, Jos, Nigeria.ORCID https://orcid.org/0000-0003-1977-5570
Patricia AgabaAIDS Prevention Initiative in Nigeria, Jos University Teaching Hospital, Jos, Nigeria.ORCID https://orcid.org/0000-0002-8847-3085
Oche O AgbajiDepartment of Internal Medicine, University of Jos, Jos University Teaching Hospital, Jos, Nigeria.ORCID https://orcid.org/0000-0002-7060-3443
Atiene S SagayDepartment of Obstetrics and Gynaecology, University of Jos, Jos University Teaching Hospital, Jos, Nigeria.ORCID https://orcid.org/0000-0002-5715-8365
Claudia HawkinsDepartment of Medicine, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, United States.ORCID https://orcid.org/0000-0001-7228-6317
University of Jos · NGJos University Teaching Hospital · NGNigerian Institute of Medical Research · NGAIDS Prevention Initiative in Nigeria · NGBenue State University · NGBingham University · NGNorthwestern University · USPlateau State University · NGUniversity of Cape Town · ZAUniversity of South Florida · USUniversity Teaching Hospital · ZMWorld Health Organization · CH

Funding

Partnership for Global Health Research Training Program (Renewal)-Supplement for OBSSR, NCI, NCI-AIDS and NIDCDD43TW010543 · FIC · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI Wafaie W Fawzi, DAVIDSON HOWES HAMER · 2017 to 2026
$12.1M
FIC NIH HHS D43 TW010543World Health Organization 001
6 · The paper itself

Abstract

Background: Previous studies in Nigeria have reported the presence of hepatitis B virus (HBV) genotype E and the availability of immune escape mutants. There is a paucity of data on chronic patients on long-term antiviral therapy for HBV infection. Objective: This study assessed HBV genotypes and drug resistance variants among patients with chronic HBV infection receiving tenofovir in Jos, Nigeria. Methods: This cross-sectional study consecutively enrolled 101 patients (51 with HIV/HBV co-infection and 50 with HBV infection only) on antiviral therapy from February 2018 to May 2019 at four hospitals in Jos, Nigeria. DNA quantification of HBV was performed on all samples; 30 samples with detectable viral load were selected for genotyping using Sanger sequencing by targeting the full-length sequences of reverse transcriptase gene of the HBV genome. Phylogenetic analysis was performed with reference sequences from GenBank. Escape mutant and drug resistance analysis were performed using HBV drug resistance interpretation and Geno2pheno. Results: Only 30 (29.7%) of the 101 study participants had detectable HBV DNA. Of these, six (20.0%) isolates were successfully amplified and sequenced. The identified genotype was E, including escape mutations L127R (16.7%) and G145A (16.7%). Conclusion: This study revealed exclusive dominance of genotype E in Nigeria. The S gene mutations G145A and L271R are known to be associated with modified antigenicity and impaired serologic assays, which may cause false negatives in the detection of anti-HBV surface antigen. The presence of mutants that are associated with vaccine immune escape may also have diagnostic and vaccine immune response implications.

Indexed as

antiviral drug resistancechronic hepatitis Bgenotypinghepatitis B virus (HBV)

Identifiers

PMID36337771
PMCPMC9634812
OpenAlexW4306944290

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.