Evidence map›Paper›PMID 36336987›Full record

ArticleEpilepsia2023

Brain molecular mechanisms in Rasmussen encephalitis.

Dominique F Leitner, Ziyan Lin, Zacharia Sawaged, Evgeny Kanshin, Daniel Friedman, Sasha Devore, Beatrix Ueberheide, Julia W Chang, Gary W Mathern, Jasper J Anink and 3 more

Open access · greenAbstract read
In one paragraph

Article in Epilepsia, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Dominique F LeitnerComprehensive Epilepsy Center, NYU Grossman School of Medicine, New York, New York, USA.ORCID 0000-0002-1371-9861
Ziyan LinApplied Bioinformatics Laboratories, NYU Grossman School of Medicine, New York, New York, USA.
Zacharia SawagedApplied Bioinformatics Laboratories, NYU Grossman School of Medicine, New York, New York, USA.
Evgeny KanshinProteomics Laboratory, Division of Advanced Research Technologies, NYU Grossman School of Medicine, New York, New York, USA.
Daniel FriedmanComprehensive Epilepsy Center, NYU Grossman School of Medicine, New York, New York, USA.
Sasha DevoreComprehensive Epilepsy Center, NYU Grossman School of Medicine, New York, New York, USA.
Beatrix UeberheideCenter for Cognitive Neurology, Department of Neurology, NYU Grossman School of Medicine, New York, New York, USA.
Julia W ChangDepartments of Neurosurgery and Psychiatry, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, California, USA.
Gary W MathernDepartments of Neurosurgery and Psychiatry, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, California, USA.
Jasper J AninkDepartment of (Neuro) Pathology, Amsterdam University Medical Center, University of Amsterdam, Amsterdam Neuroscience, Amsterdam, the Netherlands.
Eleonora AronicaDepartment of (Neuro) Pathology, Amsterdam University Medical Center, University of Amsterdam, Amsterdam Neuroscience, Amsterdam, the Netherlands.
Thomas WisniewskiCenter for Cognitive Neurology, Department of Neurology, NYU Grossman School of Medicine, New York, New York, USA.ORCID 0000-0002-3379-8966
Orrin DevinskyComprehensive Epilepsy Center, NYU Grossman School of Medicine, New York, New York, USA.ORCID 0000-0003-0044-4632
New York University · USCenter for Neuro-Oncology · USAmsterdam Neuroscience · NLUniversity of California, Los Angeles · US

Funding

Research Education ComponentP30AG066512 · NIA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Mary Sherman Mittelman · 2020 to 2026
$28.4M
Transgenic/Behavior CoreP01AG060882 · NIA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WISNIEWSKI, THOMAS M · 2020 to 2024
$12.0M
Machine learning approaches for improving EEG data utility in SUDEP researchR01NS123928 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DEVINSKY, ORRIN, FRIEDMAN, DANIEL · 2021 to 2025
$3.1M
NIA NIH HHS P01 AG060882NIA NIH HHS P30 AG066512NINDS NIH HHS R01 NS123928
6 · The paper itself

Abstract

objectiveThis study was undertaken to identify molecular mechanisms in brain tissue of Rasmussen encephalitis (RE) when compared to people with non-RE epilepsy (PWE) and control cases using whole exome sequencing (WES), RNAseq, and proteomics.

methodsFrozen brain tissue (ages = 2-19 years) was obtained from control autopsy (n = 14), surgical PWE (n = 10), and surgical RE cases (n = 27). We evaluated WES variants in RE associated with epilepsy, seizures, RE, and human leukocyte antigens (HLAs). Differential expression was evaluated by RNAseq (adjusted p < .05) and label-free quantitative mass spectrometry (false discovery rate < 5%) in the three groups.

resultsWES revealed no common pathogenic variants in RE, but several rare and likely deleterious variants of unknown significance (VUS; ANGPTL7/MTOR, SCN1A, FCGR3B, MTOR) and more common HLA VUS in >25% of RE cases (HLA-DRB1, HLA-DQA2), all with allele frequency < 5% in the general population. RNAseq in RE versus PWE (1516 altered transcripts) revealed significant activation of crosstalk between dendritic and natural killer cells (p = 7.94 × 10 SIGNIFICANCE: In RE, we identified activated immune signaling pathways and immune cell type annotation enrichment that suggest roles of the innate and adaptive immune responses, as well as HLA variants that may increase vulnerability to RE. Follow-up studies could evaluate cell type density and subregional localization associated with top targets, clinical history (neuropathology, disease duration), and whether modulating crosstalk between dendritic and natural killer cells may limit disease progression.

Indexed as

EncephalitisEpilepsyAdolescentAdultAngiopoietin-Like Protein 7Angiopoietin-like ProteinsBrainChildChild, PreschoolHumansInflammationTOR Serine-Threonine KinasesYoung AdultAngiopoietin-Like Protein 7Angiopoietin-like ProteinsANGPTL7 protein, humanTOR Serine-Threonine KinasesexomeproteomicsRasmussen encephalitisRNAseq

Identifiers

PMID36336987
PMCPMC9852002
OpenAlexW4308373401

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.