Evidence map›Paper›PMID 36335405›Full record

SynthesisCritical care (London, England)2022

A genome-wide association study of survival in patients with sepsis.

Tamara Hernandez-Beeftink, Beatriz Guillen-Guio, Jose M Lorenzo-Salazar, Almudena Corrales, Eva Suarez-Pajes, Rui Feng, Luis A Rubio-Rodríguez, Megan L Paynton, Raquel Cruz, M Isabel García-Laorden and 24 more

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Critical care (London, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  6. Article
  7. Review
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  9. Review
  10. Article
  11. Genetic associations in sepsis and ARDS.Frontiers in pharmacology · 2026
    Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
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  19. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 19 institutions in 4 countries.

Tamara Hernandez-BeeftinkResearch Unit, Hospital Universitario Nuestra Señora de Candelaria, Carretera del Rosario S/N, Santa Cruz de Tenerife, Spain.
Beatriz Guillen-GuioResearch Unit, Hospital Universitario Nuestra Señora de Candelaria, Carretera del Rosario S/N, Santa Cruz de Tenerife, Spain.
Jose M Lorenzo-SalazarGenomics Division, Instituto Tecnológico y de Energías Renovables (ITER), Santa Cruz de Tenerife, Spain.
Almudena CorralesResearch Unit, Hospital Universitario Nuestra Señora de Candelaria, Carretera del Rosario S/N, Santa Cruz de Tenerife, Spain.
Eva Suarez-PajesResearch Unit, Hospital Universitario Nuestra Señora de Candelaria, Carretera del Rosario S/N, Santa Cruz de Tenerife, Spain.
Rui FengDepartment of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania Perelman School of Medicine, Philadelphia, USA.
Luis A Rubio-RodríguezGenomics Division, Instituto Tecnológico y de Energías Renovables (ITER), Santa Cruz de Tenerife, Spain.
Megan L PayntonDepartment of Health Sciences, University of Leicester, Leicester, UK.
Raquel CruzGenomic Medicine Group, Biomedical Research Center of Rare Diseases (CIBERER), University of Santiago de Compostela, Santiago de Compostela, Spain.
M Isabel García-LaordenResearch Unit, Hospital Universitario de Gran Canaria Dr. Negrin, Las Palmas de Gran Canaria, Spain.
Miryam Prieto-GonzálezIntensive Care Unit, Complejo Asistencial Universitario de Palencia, Palencia, Spain.
Aurelio Rodríguez-PérezDepartment of Anesthesiology, Hospital Universitario de Gran Canaria Dr. Negrín, Las Palmas de Gran Canaria, Spain.
Demetrio CarriedoIntensive Care Unit, Complejo Hospitalario Universitario de León, León, Spain.
Jesús BlancoGenomics Division, Instituto Tecnológico y de Energías Renovables (ITER), Santa Cruz de Tenerife, Spain.
Alfonso AmbrósIntensive Care Unit, Hospital General de Ciudad Real, Ciudad Real, Spain.
Elena González-HiguerasIntensive Care Unit, Hospital Virgen de la Luz, Cuenca, Spain.
Elena EspinosaDepartment of Anesthesiology, Hospital Universitario N.S. de Candelaria, Santa Cruz de Tenerife, Spain.
Arturo MurielIntensive Care Unit, Hospital Universitario Rio Hortega, Valladolid, Spain.
Eduardo TamayoCIBER de Enfermedades Infecciosas, Department of Anesthesiology and Resuscitation, Hospital Clínico Universitario de Valladolid, Valladolid, Spain.
María M MartinIntensive Care Unit, Hospital Universitario Nuestra Señora de Candelaria, Santa Cruz de Tenerife, Spain.
Leonardo LorenteIntensive Care Unit, Hospital Universitario de Canarias, La Laguna, Tenerife, Spain.
David DomínguezDepartment of Anesthesiology, Hospital Universitario N.S. de Candelaria, Santa Cruz de Tenerife, Spain.
Abelardo García de LorenzoIntensive Care Unit, Hospital Universitario La Paz, IdiPAZ, Madrid, Spain.
Heather M GianniniDivision of Pulmonary, Allergy, and Critical Care Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, USA.
John P ReillyDivision of Pulmonary, Allergy, and Critical Care Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, USA.
Tiffanie K JonesDivision of Pulmonary, Allergy, and Critical Care Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, USA.
José M AñónIntensive Care Unit, Hospital Universitario La Paz, IdiPAZ, Madrid, Spain.
Marina SoroDepartment of Anesthesiology, Hospital Clinico Universitario de Valencia, Valencia, Spain.
Ángel CarracedoGenomic Medicine Group, Biomedical Research Center of Rare Diseases (CIBERER), University of Santiago de Compostela, Santiago de Compostela, Spain.
Louise V WainDepartment of Health Sciences, University of Leicester, Leicester, UK.
Nuala J MeyerDivision of Pulmonary, Allergy, and Critical Care Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, USA.
Jesús VillarResearch Unit, Hospital Universitario de Gran Canaria Dr. Negrin, Las Palmas de Gran Canaria, Spain.
Carlos FloresResearch Unit, Hospital Universitario Nuestra Señora de Candelaria, Carretera del Rosario S/N, Santa Cruz de Tenerife, Spain. cflores@ull.edu.es.
Genetics of Sepsis (GEN-SEP) Network
Hospital Universitario Nuestra Señora de Candelaria · ESUniversity of Pennsylvania · USInstituto Tecnológico y de Energías Renovables · ESUniversity of Leicester · GBHospital Universitario de Gran Canaria Doctor Negrín · ESHospital Universitario La Paz · ESCenter for Research in Molecular Medicine and Chronic Diseases · ESCentre for Biomedical Network Research on Rare Diseases · ESComplejo Asistencial Universitario de Palencia · ESHospital Clínico Universitario de Valencia · ESHospital Clínico Universitario de Valladolid · ESHospital de León · ESHospital General Universitario de Ciudad Real · ESHospital Universitario de Canarias · ESHospital Universitario Río Hortega · ESHospital Virgen de la Luz · ESInstituto de Salud Carlos III · ESUniversidad de Las Palmas de Gran Canaria · ESUniversidad Fernando Pessoa Canarias · ES

Funding

Investigating Individual Susceptibility and Host Response in Acute Respiratory Distress SyndromeR35HL161196 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI Nuala Jennings Meyer · 2022 to 2026
$4.8M
Targeting Angiopoietin-2 in ARDSR01HL137006 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI MEYER, NUALA JENNINGS · 2017 to 2021
$2.5M
Reconsidering the IL-1 axis in sepsis-associated ARDSR01HL137915 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI MEYER, NUALA JENNINGS · 2017 to 2020
$2.1M
Mentoring Patient-Oriented Research to Promote ARDS Precision MedicineK24HL155804 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI MEYER, NUALA JENNINGS · 2021 to 2021
$124k
NHLBI NIH HHS K24 HL155804NHLBI NIH HHS R01 HL137006NHLBI NIH HHS R01 HL137915NHLBI NIH HHS R35 HL161196
6 · The paper itself

Abstract

backgroundSepsis is a severe systemic inflammatory response to infections that is accompanied by organ dysfunction and has a high mortality rate in adult intensive care units. Most genetic studies have identified gene variants associated with development and outcomes of sepsis focusing on biological candidates. We conducted the first genome-wide association study (GWAS) of 28-day survival in adult patients with sepsis.

methodsThis study was conducted in two stages. The first stage was performed on 687 European sepsis patients from the GEN-SEP network and 7.5 million imputed variants. Association testing was conducted with Cox regression models, adjusting by sex, age, and the main principal components of genetic variation. A second stage focusing on the prioritized genetic variants was performed on 2,063 ICU sepsis patients (1362 European Americans and 701 African-Americans) from the MESSI study. A meta-analysis of results from the two stages was conducted and significance was established at p < 5.0 × 10

findingsWe identified three independent low-frequency variants associated with reduced 28-day sepsis survival, including a missense variant in SAMD9 (hazard ratio [95% confidence interval] = 1.64 [1.37-6.78], p = 4.92 × 10

interpretationWe performed the first GWAS of 28-day sepsis survival and identified novel variants associated with reduced survival. Larger sample size studies are needed to better assess the genetic effects in sepsis survival and to validate the findings.

Indexed as

Genome-Wide Association StudySepsisAdultBlack or African AmericanHumansIntracellular Signaling Peptides and ProteinsPolymorphism, Single NucleotideWhite PeopleIntracellular Signaling Peptides and ProteinsSAMD9 protein, human28 daysGenome-wide association studyGenomicsOutcomeSepsis

Identifiers

PMID36335405
PMCPMC9637317
OpenAlexW4308475629

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.