Evidence map›Paper›PMID 36335097›Full record

ArticleNature communications2022

Analysis of clinically relevant variants from ancestrally diverse Asian genomes.

Sock Hoai Chan, Yasmin Bylstra, Jing Xian Teo, Jyn Ling Kuan, Nicolas Bertin, Mar Gonzalez-Porta, Maxime Hebrard, Roberto Tirado-Magallanes, Joanna Hui Juan Tan, Justin Jeyakani and 23 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 1 pooled it
12.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 1 synthesis or guideline pooled it, 71 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 14 institutions in 3 countries.

Sock Hoai Chan *Cancer Genetics Service, Division of Medical Oncology, National Cancer Centre Singapore, Singapore, 169610, Singapore.ORCID 0000-0002-9002-350X
Yasmin Bylstra *SingHealth Duke-NUS Institute of Precision Medicine, Singapore, 169609, Singapore.
Jing Xian TeoSingHealth Duke-NUS Institute of Precision Medicine, Singapore, 169609, Singapore.
Jyn Ling KuanSingHealth Duke-NUS Institute of Precision Medicine, Singapore, 169609, Singapore.
Nicolas BertinGenome Research Informatics & Data Science Platform, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore, 138672, Singapore.
Mar Gonzalez-PortaGenome Research Informatics & Data Science Platform, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore, 138672, Singapore.
Maxime HebrardGenome Research Informatics & Data Science Platform, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore, 138672, Singapore.ORCID 0000-0003-2346-4513
Roberto Tirado-MagallanesGenome Research Informatics & Data Science Platform, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore, 138672, Singapore.
Joanna Hui Juan TanGenome Research Informatics & Data Science Platform, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore, 138672, Singapore.
Justin JeyakaniGenome Research Informatics & Data Science Platform, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore, 138672, Singapore.
Zhihui LiGenome Research Informatics & Data Science Platform, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore, 138672, Singapore.
Jin Fang ChaiSaw Swee Hock School of Public Health, National University of Singapore, Singapore, 117549, Singapore.
Yap Seng ChongDepartment of Obstetrics & Gynaecology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, 119228, Singapore.
Sonia DavilaSingHealth Duke-NUS Institute of Precision Medicine, Singapore, 169609, Singapore.
Liuh Ling GohPersonalized Medicine Service, Tan Tock Seng Hospital, Singapore, 308433, Singapore.ORCID 0000-0002-1387-3682
Eng Sing LeeLee Kong Chian School of Medicine, Nanyang Technological University, Singapore, 308232, Singapore.ORCID 0000-0003-4963-535X
Eleanor WongGenome Institute of Singapore, Agency for Science, Technology and Research, Singapore, 138672, Singapore.ORCID 0000-0001-7094-7679
Tien Yin WongSingapore Eye Research Institute, Singapore National Eye Centre, Singapore, 168751, Singapore.
SG10K_Health Consortium
Shyam PrabhakarLaboratory of Systems Biology and Data Analytics, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore, 138672, Singapore.ORCID 0000-0002-6409-0661
Jianjun LiuHuman Genomics, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore, 138672, Singapore.ORCID 0000-0002-3255-3019
Ching-Yu ChengSingapore Eye Research Institute, Singapore National Eye Centre, Singapore, 168751, Singapore.ORCID 0000-0003-0655-885X
Birgit EisenhaberGenome Institute of Singapore, Agency for Science, Technology and Research, Singapore, 138672, Singapore.
Neerja KarnaniHuman Development, Singapore Institute for Clinical Sciences, Singapore, 117609, Singapore.ORCID 0000-0002-5301-409X
Khai Pang LeongPersonalized Medicine Service, Tan Tock Seng Hospital, Singapore, 308433, Singapore.
Xueling SimSaw Swee Hock School of Public Health, National University of Singapore, Singapore, 117549, Singapore.ORCID 0000-0002-1233-7642
Khung Keong YeoSingHealth Duke-NUS Institute of Precision Medicine, Singapore, 169609, Singapore.ORCID 0000-0002-5457-4881
John C ChambersLee Kong Chian School of Medicine, Nanyang Technological University, Singapore, 308232, Singapore.
E-Shyong TaiSaw Swee Hock School of Public Health, National University of Singapore, Singapore, 117549, Singapore.ORCID 0000-0003-2929-8966
Patrick TanSingHealth Duke-NUS Institute of Precision Medicine, Singapore, 169609, Singapore. patrick.tan@precise.cris.sg.ORCID 0000-0002-0179-8048
Saumya S JamuarSingHealth Duke-NUS Institute of Precision Medicine, Singapore, 169609, Singapore. Saumya.S.Jamuar@singhealth.com.sg.ORCID 0000-0003-2341-8349
Joanne NgeowCancer Genetics Service, Division of Medical Oncology, National Cancer Centre Singapore, Singapore, 169610, Singapore. joanne.ngeow@ntu.edu.sg.ORCID 0000-0003-1558-3627
Weng Khong LimSingHealth Duke-NUS Institute of Precision Medicine, Singapore, 169609, Singapore. wengkhong.lim@duke-nus.edu.sg.ORCID 0000-0003-4391-1130
Agency for Science, Technology and Research · SGNational University of Singapore · SGNanyang Technological University · SGTan Tock Seng Hospital · SGSingapore National Eye Center · SGSingHealth · SGNational Heart Centre Singapore · SGDuke-NUS Medical School · SGImperial College London · GBSingapore Institute for Clinical Sciences · SGKK Women's and Children's Hospital · SGNational Neuroscience Institute · SGSingapore General Hospital · SGSingHealth Duke-NUS Academic Medical Centre · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Asian populations are under-represented in human genomics research. Here, we characterize clinically significant genetic variation in 9051 genomes representing East Asian, South Asian, and severely under-represented Austronesian-speaking Southeast Asian ancestries. We observe disparate genetic risk burden attributable to ancestry-specific recurrent variants and identify individuals with variants specific to ancestries discordant to their self-reported ethnicity, mostly due to cryptic admixture. About 27% of severe recessive disorder genes with appreciable carrier frequencies in Asians are missed by carrier screening panels, and we estimate 0.5% Asian couples at-risk of having an affected child. Prevalence of medically-actionable variant carriers is 3.4% and a further 1.6% harbour variants with potential for pathogenic classification upon additional clinical/experimental evidence. We profile 23 pharmacogenes with high-confidence gene-drug associations and find 22.4% of Asians at-risk of Centers for Disease Control and Prevention Tier 1 genetic conditions concurrently harbour pharmacogenetic variants with actionable phenotypes, highlighting the benefits of pre-emptive pharmacogenomics. Our findings illuminate the diversity in genetic disease epidemiology and opportunities for precision medicine for a large, diverse Asian population.

Indexed as

Asian PeopleGenome, HumanChildEthnicityHumansPharmacogeneticsPhenotype

Identifiers

PMID36335097
PMCPMC9637116
OpenAlexW4308455092

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.