Evidence map›Paper›PMID 36333305›Full record

ArticleNature communications2022

Pathogenic variants in SLF2 and SMC5 cause segmented chromosomes and mosaic variegated hyperploidy.

Laura J Grange, John J Reynolds, Farid Ullah, Bertrand Isidor, Robert F Shearer, Xenia Latypova, Ryan M Baxley, Antony W Oliver, Anil Ganesh, Sophie L Cooke and 38 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Investigation of DNA Damage Response Genes Validates the Role of DNA Repair in Pediatric Cancer Risk and IdentifiesJournal of clinical oncology : official journal of the American Society of Clinical Oncology · 2025
    Article
  9. RecessiveDiagnostics (Basel, Switzerland) · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Pathogenic variants inmedRxiv : the preprint server for health sciences · 2025
    Article
  14. Article
  15. Review
  16. Update on Recommendations for Cancer Screening and Surveillance in Children with Genomic Instability Disorders.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

48 authors at 20 institutions in 11 countries.

Laura J Grange *Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.ORCID 0000-0003-0909-4341
John J Reynolds *Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.ORCID 0000-0001-8690-5828
Farid Ullah *Advanced Center for Genetic and Translational Medicine (ACT-GeM), Stanley Manne Children's Research Institute, Ann & Robert H Lurie Children's Hospital of Chicago, Chicago, IL, USA.
Bertrand Isidor *Service de Génétique Médicale, CHU Nantes, Nantes Cedex 1, France.
Robert F ShearerNovo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0003-3012-8788
Xenia LatypovaService de Génétique Médicale, CHU Nantes, Nantes Cedex 1, France.
Ryan M BaxleyDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0002-3286-7990
Antony W OliverGenome Damage and Stability Centre, Science Park Road, University of Sussex, Falmer, Brighton, UK.ORCID 0000-0002-2912-8273
Anil GaneshInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Sophie L CookeInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.ORCID 0000-0001-8169-8735
Satpal S JhujhInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.ORCID 0000-0001-5766-659X
Gavin S McNeeInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Robert HollingworthInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Martin R HiggsInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.ORCID 0000-0002-8218-0089
Toyoaki NatsumeDepartment of Chromosome Science, National Institute of Genetics, Research Organization of Information and Systems (ROIS), Mishima, Shizuoka, Japan.
Tahir KhanCenter for Human Disease Modeling, Duke University Medical Center, Durham, NC, USA.ORCID 0000-0003-3096-8795
Gabriel Á Martos-MorenoHospital Infantil Universitario Niño Jesús, CIBER de fisiopatología de la obesidad y nutrición (CIBEROBN), Instituto de Salud Carlos III, Universidad Autónoma de Madrid, Madrid, Spain.
Sharon ChuppThe Community Health Clinic, Topeka, IN, USA.
Christopher G MathewSydney Brenner Institute for Molecular Bioscience, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.ORCID 0000-0003-4178-1838
David ParryMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, Western General Hospital, The University of Edinburgh, Edinburgh, Scotland.ORCID 0000-0003-0376-7736
Michael A SimpsonDepartment of Medical and Molecular Genetics, Faculty of Life Science and Medicine, Guy's Hospital, King's College London, London, UK.ORCID 0000-0002-8539-8753
Nahid NahavandiBioscientia Institute for Medical Diagnostics, Human Genetics, Ingelheim, Germany.
Zafer YükselBioscientia Institute for Medical Diagnostics, Human Genetics, Ingelheim, Germany.ORCID 0000-0002-2085-5773
Mojgan DrasdoBioscientia Institute for Medical Diagnostics, Human Genetics, Ingelheim, Germany.
Anja KronBioscientia Institute for Medical Diagnostics, Human Genetics, Ingelheim, Germany.
Petra VogtBioscientia Institute for Medical Diagnostics, Human Genetics, Ingelheim, Germany.
Annemarie JonassonBioscientia Institute for Medical Diagnostics, Human Genetics, Ingelheim, Germany.
Saad Ahmed SethKing Fahad Military Medical Complex, Dhahran, Saudi Arabia.ORCID 0000-0002-0570-2031
Claudia Gonzaga-JaureguiRegeneron Genetics Center, Regeneron Pharmaceuticals Inc., Tarrytown, NY, USA.
Karlla W BrigattiClinic for Special Children, Strasburg, PA, USA.
Alexander P A StegmannDepartment of Clinical Genetics, Maastricht University Medical Center, Maastricht, The Netherlands.ORCID 0000-0002-9736-7137
Masato KanemakiDepartment of Genetics, The Graduate University for Advanced Studies (SOKENDAI), Mishima, Shizuoka, Japan.ORCID 0000-0002-7657-1649
Dragana JosifovaClinical Genetics Department, Guy's Hospital, London, UK.ORCID 0000-0001-7634-9207
Yuri UchiyamaDepartment of Rare Disease Genomics, Yokohama City University Hospital, Yokohama, Japan.ORCID 0000-0002-4540-5277
Yukiko OhDepartment of Paediatrics, Jichi Medical University School of Medicine, Tochigi, Japan.
Akira MorimotoDepartment of Paediatrics, Jichi Medical University School of Medicine, Tochigi, Japan.
Hitoshi OsakaDepartment of Paediatrics, Jichi Medical University School of Medicine, Tochigi, Japan.ORCID 0000-0002-1320-1165
Zineb AmmousThe Community Health Clinic, Topeka, IN, USA.
Jesús ArgenteHospital Infantil Universitario Niño Jesús, CIBER de fisiopatología de la obesidad y nutrición (CIBEROBN), Instituto de Salud Carlos III, Universidad Autónoma de Madrid, Madrid, Spain.ORCID 0000-0001-5826-0276
Naomichi MatsumotoDepartment of Rare Disease Genomics, Yokohama City University Hospital, Yokohama, Japan.ORCID 0000-0001-9846-6500
Constance T R M StumpelDepartment of Clinical Genetics and GROW-School for Oncology and Developmental Biology, Maastricht University Medical Center, Maastricht, The Netherlands.
Alexander M R TaylorInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.ORCID 0000-0002-7818-7595
Andrew P JacksonMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, Western General Hospital, The University of Edinburgh, Edinburgh, Scotland.
Anja-Katrin BielinskyDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0003-1783-619X
Niels MailandNovo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0002-6623-709X
Cedric Le CaignecCentre Hospitalier Universitaire Toulouse, Service de Génétique Médicale and ToNIC, Toulouse NeuroImaging Center, Inserm, UPS, Université de Toulouse, Toulouse, France. lecaignec.c@chu-toulouse.fr.ORCID 0000-0002-0598-653X
Erica E DavisAdvanced Center for Genetic and Translational Medicine (ACT-GeM), Stanley Manne Children's Research Institute, Ann & Robert H Lurie Children's Hospital of Chicago, Chicago, IL, USA. eridavis@luriechildrens.org.ORCID 0000-0002-2412-8397
Grant S StewartInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK. g.s.stewart@bham.ac.uk.ORCID 0000-0002-0960-3241
University of Birmingham · GBJichi Medical University · JPGénétique Médicale & Génomique Fonctionelle · FRGuy's Hospital · GBInstituto de Salud Carlos III · ESMaastricht University · NLUniversity of Copenhagen · DKUniversity of Minnesota · USWestern General Hospital · GBYokohama City University Hospital · JPAutonomous University of Queretaro · MXClinic for Special Children · USDuke Medical Center · USKing Fahd Military Medical Complex · SALurie Children's Hospital · USNational Institute of Genetics · JPNorthwestern University · USThe Graduate University for Advanced Studies, SOKENDAI · JPUniversité Toulouse III - Paul Sabatier · FRUniversity of Sussex · GB

Funding

Functional Dissection of CNVs in Neurodevelopmental TraitsR01MH106826 · NIMH · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI DAVIS, ERICA ELLEN · 2015 to 2025
$4.6M
The role of DNA damage tolerance pathways in human cellsR01GM134681 · NIGMS · UNIVERSITY OF VIRGINIA · PI George Lucian Moldovan, Claudia M Nicolae · 2019 to 2026
$3.0M
Mechanistic insight into genome stability pathwaysR35GM141805 · NIGMS · UNIVERSITY OF VIRGINIA · PI Anja-Katrin Bielinsky · 2021 to 2026
$2.9M
Medical Research Council MC_UU_00007/5Medical Research Council MR/P018955/1NIGMS NIH HHS R01 GM134681NIGMS NIH HHS R35 GM141805NIMH NIH HHS R01 MH106826
6 · The paper itself

Abstract

Embryonic development is dictated by tight regulation of DNA replication, cell division and differentiation. Mutations in DNA repair and replication genes disrupt this equilibrium, giving rise to neurodevelopmental disease characterized by microcephaly, short stature and chromosomal breakage. Here, we identify biallelic variants in two components of the RAD18-SLF1/2-SMC5/6 genome stability pathway, SLF2 and SMC5, in 11 patients with microcephaly, short stature, cardiac abnormalities and anemia. Patient-derived cells exhibit a unique chromosomal instability phenotype consisting of segmented and dicentric chromosomes with mosaic variegated hyperploidy. To signify the importance of these segmented chromosomes, we have named this disorder Atelís (meaning - incomplete) Syndrome. Analysis of Atelís Syndrome cells reveals elevated levels of replication stress, partly due to a reduced ability to replicate through G-quadruplex DNA structures, and also loss of sister chromatid cohesion. Together, these data strengthen the functional link between SLF2 and the SMC5/6 complex, highlighting a distinct role for this pathway in maintaining genome stability.

Indexed as

Cell Cycle ProteinsMicrocephalyChromosomal Proteins, Non-HistoneChromosomesDNA-Binding ProteinsDNA RepairGenomic InstabilityHumansUbiquitin-Protein LigasesCell Cycle ProteinsChromosomal Proteins, Non-HistoneDNA-Binding ProteinsRAD18 protein, humanSMC5 protein, humanUbiquitin-Protein Ligases

Identifiers

PMID36333305
PMCPMC9636423
OpenAlexW4308192314

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.