Evidence map›Paper›PMID 36332631›Full record

ArticleStem cell reports2022

BRD9-containing non-canonical BAF complex maintains somatic cell transcriptome and acts as a barrier to human reprogramming.

Kenan Sevinç, Gülben Gürhan Sevinç, Ayşe Derya Cavga, Martin Philpott, Simge Kelekçi, Hazal Can, Adam P Cribbs, Abdullah Burak Yıldız, Alperen Yılmaz, Enes Sefa Ayar and 7 more

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
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  4. SMARCD1 and Its Functional Relevance in SWI/SNF and Cancer.International journal of molecular sciences · 2026
    Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. BRD8 Guards the Pluripotent State by Sensing and Maintaining Histone Acetylation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Metabolic control of induced pluripotency.Frontiers in cell and developmental biology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 3 countries.

Kenan SevinçSchool of Medicine, Koç University, Istanbul, Turkey.
Gülben Gürhan SevinçSchool of Medicine, Koç University, Istanbul, Turkey.
Ayşe Derya CavgaSchool of Medicine, Koç University, Istanbul, Turkey; Biostatistics, Bioinformatics and Data Management Core, KUTTAM, Koç University, Istanbul, Turkey.
Martin PhilpottBotnar Research Centre, Oxford NIHR BRU, University of Oxford, Oxford, UK.
Simge KelekçiSchool of Medicine, Koç University, Istanbul, Turkey.
Hazal CanSchool of Medicine, Koç University, Istanbul, Turkey.
Adam P CribbsBotnar Research Centre, Oxford NIHR BRU, University of Oxford, Oxford, UK.
Abdullah Burak YıldızSchool of Medicine, Koç University, Istanbul, Turkey.
Alperen YılmazSchool of Medicine, Koç University, Istanbul, Turkey.
Enes Sefa AyarSchool of Medicine, Koç University, Istanbul, Turkey.
Dilşad H ArabacıSchool of Medicine, Koç University, Istanbul, Turkey.
James E DunfordBotnar Research Centre, Oxford NIHR BRU, University of Oxford, Oxford, UK.
Deniz AtaSchool of Medicine, Koç University, Istanbul, Turkey.
Logan H SiguaDepartment of Cancer Biology, Dana Farber Cancer Institute, Boston, MA, USA.
Jun QiDepartment of Cancer Biology, Dana Farber Cancer Institute, Boston, MA, USA.
Udo OppermannBotnar Research Centre, Oxford NIHR BRU, University of Oxford, Oxford, UK; Centre for Medicine Discovery, University of Oxford, Oxford, UK; Oxford Centre for Translational Myeloma Research, University of Oxford, Oxford OX3 7LD, UK.
Tamer T OnderSchool of Medicine, Koç University, Istanbul, Turkey. Electronic address: tonder@ku.edu.tr.
Koç University · TRUniversity of Oxford · GBDana-Farber Cancer Institute · US

Funding

Arthritis Research UK 20522Cancer Research UKMedical Research Council MR/V010182/1
6 · The paper itself

Abstract

Epigenetic reprogramming to pluripotency requires extensive remodeling of chromatin landscapes to silence existing cell-type-specific genes and activate pluripotency genes. ATP-dependent chromatin remodeling complexes are important regulators of chromatin structure and gene expression; however, the role of recently identified Bromodomain-containing protein 9 (BRD9) and the associated non-canonical BRG1-associated factors (ncBAF) complex in reprogramming remains unknown. Here, we show that genetic or chemical inhibition of BRD9, as well as ncBAF complex subunit GLTSCR1, but not the closely related BRD7, increase human somatic cell reprogramming efficiency and can replace KLF4 and c-MYC. We find that BRD9 is dispensable for human induced pluripotent stem cells under primed but not under naive conditions. Mechanistically, BRD9 inhibition downregulates fibroblast-related genes and decreases chromatin accessibility at somatic enhancers. BRD9 maintains the expression of transcriptional regulators MN1 and ZBTB38, both of which impede reprogramming. Collectively, these results establish BRD9 as an important safeguarding factor for somatic cell identity whose inhibition lowers chromatin-based barriers to reprogramming.

Indexed as

Induced Pluripotent Stem CellsTranscriptomeBromodomain Containing ProteinsCellular ReprogrammingChromatinChromatin Assembly and DisassemblyChromosomal Proteins, Non-HistoneHumansTranscription FactorsBRD7 protein, humanBRD9 protein, humanBromodomain Containing ProteinsChromatinChromosomal Proteins, Non-HistoneTranscription FactorsBRD9chromatin remodelingiPSCnaive and primed pluripotencyreprogramming

Identifiers

PMID36332631
PMCPMC9768578
OpenAlexW4308253332

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.