Evidence map›Paper›PMID 36332031›Full record

ArticleScience advances2022

USP7 regulates the ncPRC1 Polycomb axis to stimulate genomic H2AK119ub1 deposition uncoupled from H3K27me3.

Ayestha Sijm, Yaser Atlasi, Jan A van der Knaap, Joyce Wolf van der Meer, Gillian E Chalkley, Karel Bezstarosti, Dick H W Dekkers, Wouter A S Doff, Zeliha Ozgur, Wilfred F J van IJcken and 2 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Small-molecule allosteric activator of ubiquitin-specific protease 7 (USP7).Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Review
  9. Article
  10. In vivo CRISPR screens identifyProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Ayestha SijmDepartment of Biochemistry, Erasmus University Medical Center, Rotterdam, Netherlands.ORCID 0000-0002-7304-9062
Yaser AtlasiPatrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK.ORCID 0000-0002-7350-1784
Jan A van der KnaapDepartment of Biochemistry, Erasmus University Medical Center, Rotterdam, Netherlands.ORCID 0000-0002-9175-6086
Joyce Wolf van der MeerDepartment of Biochemistry, Erasmus University Medical Center, Rotterdam, Netherlands.ORCID 0000-0001-6077-8170
Gillian E ChalkleyDepartment of Biochemistry, Erasmus University Medical Center, Rotterdam, Netherlands.
Karel BezstarostiDepartment of Biochemistry, Erasmus University Medical Center, Rotterdam, Netherlands.
Dick H W DekkersDepartment of Biochemistry, Erasmus University Medical Center, Rotterdam, Netherlands.ORCID 0000-0001-7057-6257
Wouter A S DoffDepartment of Biochemistry, Erasmus University Medical Center, Rotterdam, Netherlands.ORCID 0000-0001-9755-6686
Zeliha OzgurCenter for Biomics, Erasmus University Medical Center, Rotterdam, Netherlands.ORCID 0000-0002-7171-1884
Wilfred F J van IJckenCenter for Biomics, Erasmus University Medical Center, Rotterdam, Netherlands.ORCID 0000-0002-0421-8301
Jeroen A A DemmersDepartment of Biochemistry, Erasmus University Medical Center, Rotterdam, Netherlands.ORCID 0000-0002-8757-9611
C Peter VerrijzerDepartment of Biochemistry, Erasmus University Medical Center, Rotterdam, Netherlands.ORCID 0000-0002-6476-3264
Erasmus MC · NLQueen's University Belfast · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ubiquitin-specific protease 7 (USP7) has been implicated in cancer progression and neurodevelopment. However, its molecular targets remain poorly characterized. We combined quantitative proteomics, transcriptomics, and epigenomics to define the core USP7 network. Our multi-omics analysis reveals USP7 as a control hub that links genome regulation, tumor suppression, and histone H2A ubiquitylation (H2AK119ub1) by noncanonical Polycomb-repressive complexes (ncPRC1s). USP7 strongly stabilizes ncPRC1.6 and, to a lesser extent, ncPRC1.1. Moreover, USP7 represses expression of AUTS2, which suppresses H2A ubiquitylation by ncPRC1.3/5. Collectively, these USP7 activities promote the genomic deposition of H2AK119ub1 by ncPRC1, especially at transcriptionally repressed loci. Notably, USP7-dependent changes in H2AK119ub1 levels are uncoupled from H3K27me3. Even complete loss of the PRC1 catalytic core and H2AK119ub1 has only a limited effect on H3K27me3. Besides defining the USP7 regulome, our results reveal that H2AK119ub1 dosage is largely disconnected from H3K27me3.

Identifiers

PMID36332031
PMCPMC9635827
OpenAlexW4308341638

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.