Evidence map›Paper›PMID 36331876›Full record

ArticleeLife2022

Condensin DC loads and spreads from recruitment sites to create loop-anchored TADs in

Jun Kim, David S Jimenez, Bhavana Ragipani, Bo Zhang, Lena A Street, Maxwell Kramer, Sarah E Albritton, Lara H Winterkorn, Ana K Morao, Sevinc Ercan

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Cohesin organizes 3D DNA contacts surrounding active enhancers inbioRxiv : the preprint server for biology · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Mechanistic drivers of chromatin organization into compartments.Current opinion in genetics & development · 2024
    Review
  14. Analysis of developmental gene expression using smFISH andbioRxiv : the preprint server for biology · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Function and Evolution of the Loop Extrusion Machinery in Animals.International journal of molecular sciences · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Jun Kim *Department of Biology and Center for Genomics and Systems Biology, New York University, New York, United States.ORCID 0000-0001-9473-3093
David S Jimenez *Department of Biology and Center for Genomics and Systems Biology, New York University, New York, United States.
Bhavana RagipaniDepartment of Biology and Center for Genomics and Systems Biology, New York University, New York, United States.
Bo ZhangUCSF HSW, San Francisco, United States.
Lena A StreetDepartment of Biology and Center for Genomics and Systems Biology, New York University, New York, United States.
Maxwell KramerDepartment of Biology and Center for Genomics and Systems Biology, New York University, New York, United States.
Sarah E AlbrittonDepartment of Biology and Center for Genomics and Systems Biology, New York University, New York, United States.
Lara H WinterkornDepartment of Biology and Center for Genomics and Systems Biology, New York University, New York, United States.
Ana K MoraoDepartment of Biology and Center for Genomics and Systems Biology, New York University, New York, United States.
Sevinc ErcanDepartment of Biology and Center for Genomics and Systems Biology, New York University, New York, United States.ORCID 0000-0001-7297-1648
New York University · US

Funding

Olfactory memory acquisition consolidation and recallR01DC005991 · NIDCD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI L 'ETOILE, NOELLE D · 2005 to 2022
$7.1M
TRAINING PROGRAM IN DEVELOPMENTAL GENETICS.T32HD007520 · NICHD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TREISMAN, JESSICA E · 1999 to 2023
$3.9M
Mechanisms of condensin-mediated gene regulation in C. elegansR35GM130311 · NIGMS · NEW YORK UNIVERSITY · PI Sevinc Ercan · 2019 to 2026
$3.3M
Analyzing genomic elements in live animals by CRISPR imagingR33EB019784 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, BO · 2014 to 2016
$1.1M
NIBIB NIH HHS R33 EB019784NICHD NIH HHS T32 HD007520NIDCD NIH HHS R01 DC005991NIGMS NIH HHS R35 GM130311
6 · The paper itself

Abstract

Condensins are molecular motors that compact DNA via linear translocation. In

Indexed as

Caenorhabditis elegansGene Expression RegulationAdenosine TriphosphatasesAnimalsDNA-Binding ProteinsDosage Compensation, GeneticMultiprotein ComplexesX ChromosomeAdenosine Triphosphatasescondensin complexesDNA-Binding ProteinsMultiprotein Complexes3D genome organizationC. eleganschromosomescondensingene expressiongeneticsgenomicsHi-Cloop extrusionTADsX-chromosome

Identifiers

PMID36331876
PMCPMC9635877
OpenAlexW4308329066

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.