Evidence map›Paper›PMID 36331656›Full record

ArticleHuman genetics2023

Genome screening, reporting, and genetic counseling for healthy populations.

Selina Casalino, Erika Frangione, Monica Chung, Georgia MacDonald, Sunakshi Chowdhary, Chloe Mighton, Hanna Faghfoury, Yvonne Bombard, Lisa Strug, Trevor J Pugh and 36 more

Abstract read
In one paragraph

Article in Human genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Genomic newborn screening for rare diseases.Nature reviews. Genetics · 2023
    Review
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

46 authors.

Selina CasalinoPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Erika FrangionePathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Monica ChungPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Georgia MacDonaldPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Sunakshi ChowdharyPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Chloe MightonPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Hanna FaghfouryUniversity Health Network, Toronto, Canada.
Yvonne BombardUniversity of Toronto, Toronto, Canada.
Lisa StrugThe Hospital for Sick Children, Toronto, Canada.
Trevor J PughUniversity Health Network, Toronto, Canada.
Jared SimpsonOntario Institute for Cancer Research, Toronto, Canada.
Saranya ArnoldoUniversity of Toronto, Toronto, Canada.
Navneet AujlaPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Erin BearssPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Alexandra BinnieWilliam Osler Health System, Brampton, Canada.
Bjug BorgundvaagPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Howard ChertkowBaycrest Health Sciences, Toronto, Canada.
Marc ClausenUnity Health Toronto, Toronto, Canada.
Marc DagherUniversity of Toronto, Toronto, Canada.
Luke DevinePathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
David Di IorioPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Steven Marc FriedmanPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Chun Yiu Jordan FungPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Anne-Claude GingrasPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Lee W GoneauDynacare Medical Laboratories, Brampton, Canada.
Deepanjali KaushikWilliam Osler Health System, Brampton, Canada.
Zeeshan KhanMackenzie Health, Richmond Hill, Canada.
Elisa LapadulaPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Tiffany LuPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Tony MazzulliPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Allison McGeerPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Shelley L McLeodPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Gregory MorganPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
David RichardsonWilliam Osler Health System, Brampton, Canada.
Harpreet SinghUniversity of Toronto, Toronto, Canada.
Seth SternMackenzie Health, Richmond Hill, Canada.
Ahmed TaherUniversity of Toronto, Toronto, Canada.
Iris WongMackenzie Health, Richmond Hill, Canada.
Natasha ZareiMackenzie Health, Richmond Hill, Canada.
Elena GreenfeldPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Limin HaoLaboratory for Molecular Medicine, Partners Personalized Medicine, Boston, USA.
Matthew LeboLaboratory for Molecular Medicine, Partners Personalized Medicine, Boston, USA.
William LaneHarvard Medical School & Brigham and Women's Hospital, Boston, USA.
Abdul NoorPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Jennifer TaherPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada.
Jordan Lerner-EllisPathology & Laboratory Medicine, Mount Sinai Hospital, Sinai Health, Toronto, ON, Canada. jordan.lerner-ellis@sinaihealth.ca.

Funding

Canadian Institutes of Health Research VR4-172753CIHR VR4-172753
6 · The paper itself

Abstract

Rapid advancements of genome sequencing (GS) technologies have enhanced our understanding of the relationship between genes and human disease. To incorporate genomic information into the practice of medicine, new processes for the analysis, reporting, and communication of GS data are needed. Blood samples were collected from adults with a PCR-confirmed SARS-CoV-2 (COVID-19) diagnosis (target N = 1500). GS was performed. Data were filtered and analyzed using custom pipelines and gene panels. We developed unique patient-facing materials, including an online intake survey, group counseling presentation, and consultation letters in addition to a comprehensive GS report. The final report includes results generated from GS data: (1) monogenic disease risks; (2) carrier status; (3) pharmacogenomic variants; (4) polygenic risk scores for common conditions; (5) HLA genotype; (6) genetic ancestry; (7) blood group; and, (8) COVID-19 viral lineage. Participants complete pre-test genetic counseling and confirm preferences for secondary findings before receiving results. Counseling and referrals are initiated for clinically significant findings. We developed a genetic counseling, reporting, and return of results framework that integrates GS information across multiple areas of human health, presenting possibilities for the clinical application of comprehensive GS data in healthy individuals.

Indexed as

COVID-19Genetic CounselingAdultGenomicsGenotypeHumansSARS-CoV-2

Identifiers

PMID36331656
PMCPMC9638226

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.