Evidence map›Paper›PMID 36331280›Full record

ArticlePredictive Intelligence in Medicine. PRIME (Workshop)2022

Multiple Instance Neuroimage Transformer.

Ayush Singla, Qingyu Zhao, Daniel K Do, Yuyin Zhou, Kilian M Pohl, Ehsan Adeli

Abstract read
In one paragraph

Article in Predictive Intelligence in Medicine. PRIME (Workshop), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ayush SinglaStanford University, Stanford, CA 94305, USA.
Qingyu ZhaoStanford University, Stanford, CA 94305, USA.
Daniel K DoStanford University, Stanford, CA 94305, USA.
Yuyin ZhouStanford University, Stanford, CA 94305, USA.
Kilian M PohlStanford University, Stanford, CA 94305, USA.
Ehsan AdeliStanford University, Stanford, CA 94305, USA.

Funding

NCANDA: Data Analysis Resource - Uploading Legacy Data to NDAU24AA021697 · NIAAA · STANFORD UNIVERSITY · PI Adolf Pfefferbaum, Kilian Maria Pohl · 2016 to 2026
$12.2M
N-CANDA: DATA ANALYSIS COMPONENTU01AA021697 · NIAAA · SRI INTERNATIONAL · PI PFEFFERBAUM, ADOLF, POHL, KILIAN MARIA · 2012 to 2015
$3.6M
Interpretable Deep Forecasting of Hazardous Substance Use during High SchoolR01DA057567 · NIDA · STANFORD UNIVERSITY · PI Kilian Maria Pohl, Susan F. Tapert · 2022 to 2026
$2.3M
Longitudinal Analysis of Diffusion Tensor Imaging to Discover Adolescent Alcohol Use EffectR00AA028840 · NIAAA · WEILL MEDICAL COLL OF CORNELL UNIV · PI Qingyu Zhao · 2024 to 2026
$747k
Longitudinal Analysis of Diffusion Tensor Imaging to Discover Adolescent Alcohol Use EffectK99AA028840 · NIAAA · STANFORD UNIVERSITY · PI ZHAO, QINGYU · 2021 to 2022
$284k
NIAAA NIH HHS K99 AA028840NIAAA NIH HHS R00 AA028840NIAAA NIH HHS U01 AA021697NIAAA NIH HHS U24 AA021697NIDA NIH HHS R01 DA057567
6 · The paper itself

Abstract

For the first time, we propose using a multiple instance learning based convolution-free transformer model, called Multiple Instance Neuroimage Transformer (MINiT), for the classification of T1-weighted (T1w) MRIs. We first present several variants of transformer models adopted for neuroimages. These models extract non-overlapping 3D blocks from the input volume and perform multi-headed self-attention on a sequence of their linear projections. MINiT, on the other hand, treats each of the non-overlapping 3D blocks of the input MRI as its own instance, splitting it further into non-overlapping 3D patches, on which multi-headed self-attention is computed. As a proof-of-concept, we evaluate the efficacy of our model by training it to identify sex from T1w-MRIs of two public datasets: Adolescent Brain Cognitive Development (ABCD) and the National Consortium on Alcohol and Neurodevelopment in Adolescence (NCANDA). The learned attention maps highlight voxels contributing to identifying sex differences in brain morphometry. The code is available at https://github.com/singlaayush/MINIT.

Identifiers

PMID36331280
PMCPMC9629332

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.