Evidence map›Paper›PMID 36329726›Full record

ArticlePNAS nexus2022

Cryo-electron tomography with mixed-scale dense neural networks reveals key steps in deployment of

Li-Av Segev-Zarko, Peter D Dahlberg, Stella Y Sun, Daniël M Pelt, Chi Yong Kim, Elizabeth S Egan, James A Sethian, Wah Chiu, John C Boothroyd

Open access · goldAbstract read
In one paragraph

Article in PNAS nexus, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  4. Cryogenic electron tomography by the numbers: Charting underexplored lineages in structural cell biology.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Atomic models of the Toxoplasma cell invasion machinery.Nature structural & molecular biology · 2026
    Article
  7. Article
  8. Article
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  11. Review
  12. Architecture of theProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Article
  14. Article
  15. bioRxiv : the preprint server for biology · 2024
    Article
  16. Article
  17. Review
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Li-Av Segev-ZarkoDepartment of Microbiology and Immunology, Stanford University School of Medicine, 291 Campus Drive, Stanford, CA 94305, USA.ORCID https://orcid.org/0000-0003-4151-5513
Peter D DahlbergDepartment of Chemistry, Stanford University, 450 Serra Mall, Stanford, CA 94305, USA.ORCID https://orcid.org/0000-0003-4452-2663
Stella Y SunDepartment of Bioengineering, Stanford University, 450 Serra Mall, Stanford, CA 94305, USA.
Daniël M PeltLeiden Institute of Advanced Computer Science, Leiden University, Rapenburg 70, 2311 EZ Leiden, The Netherlands.
Chi Yong KimDepartment of Microbiology and Immunology, Stanford University School of Medicine, 291 Campus Drive, Stanford, CA 94305, USA.
Elizabeth S EganDepartment of Microbiology and Immunology, Stanford University School of Medicine, 291 Campus Drive, Stanford, CA 94305, USA.ORCID https://orcid.org/0000-0002-2112-7700
James A SethianDepartment of Mathematics, University of California, Berkeley, CA 94720, USA.
Wah ChiuDepartment of Microbiology and Immunology, Stanford University School of Medicine, 291 Campus Drive, Stanford, CA 94305, USA.ORCID https://orcid.org/0000-0002-8910-3078
John C BoothroydDepartment of Microbiology and Immunology, Stanford University School of Medicine, 291 Campus Drive, Stanford, CA 94305, USA.
Stanford University · USLawrence Berkeley National Laboratory · USLeiden University · NLSLAC National Accelerator Laboratory · USUniversity of Pittsburgh · US

Funding

3 D ELECTRON MICROSCOPY OF MACROMOLECULES (5P41RR002250-27)P41GM103832 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH · 2012 to 2019
$15.1M
Single-Molecule Imaging for Cell Biology and Super-Resolution MicroscopyR35GM118067 · NIGMS · STANFORD UNIVERSITY · PI MOERNER, WILLIAM E · 2016 to 2025
$6.2M
Identifying critical erythrocyte host factors for Plasmodium falciparum malariaDP2HL137186 · NHLBI · STANFORD UNIVERSITY · PI EGAN, ELIZABETH S. · 2016 to 2016
$2.4M
Acquisition of a 300 kV Electron Microscope for Structural BiologyS10OD021600 · OD · STANFORD UNIVERSITY · PI CHIU, WAH · 2016 to 2016
$2.0M
Tools for Quantitative Analysis of Complex Systems in CryoETP01GM121203 · NIGMS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI PENCZEK, PAWEL A. · 2018 to 2019
$1.9M
NHLBI NIH HHS DP2 HL137186NIGMS NIH HHS P01 GM121203NIGMS NIH HHS P41 GM103832NIGMS NIH HHS R35 GM118067NIH HHS S10 OD021600
6 · The paper itself

Abstract

Host cell invasion by intracellular, eukaryotic parasites within the phylum Apicomplexa is a remarkable and active process involving the coordinated action of apical organelles and other structures. To date, capturing how these structures interact during invasion has been difficult to observe in detail. Here, we used cryogenic electron tomography to image the apical complex of

Identifiers

PMID36329726
PMCPMC9615128
OpenAlexW4295353205

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.