Evidence map›Paper›PMID 36329197›Full record

ArticleNature microbiology2022

Methanotrophy by a Mycobacterium species that dominates a cave microbial ecosystem.

Rob J M van Spanning, Qingtian Guan, Chrats Melkonian, James Gallant, Lubos Polerecky, Jean-François Flot, Bernd W Brandt, Martin Braster, Paul Iturbe Espinoza, Joost W Aerts and 11 more

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Nature microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it, 63 citations in OpenAlex.

  1. Pooled it
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  12. Basic assessment of microbial dynamics in large- and small-scale biofilters.Biotechnology reports (Amsterdam, Netherlands) · 2025
    Article
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  19. First isolation of a methanotrophicApplied and environmental microbiology · 2025
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 9 institutions in 5 countries.

Rob J M van SpanningSection Molecular Microbiology, A-LIFE, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands. rob.van.spanning@vu.nl.
Qingtian GuanBioscience program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Tuwal, Saudi Arabia.
Chrats MelkonianSection Molecular Microbiology, A-LIFE, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.
James GallantDepartment of Medical Microbiology and Infection Control, Amsterdam University Medical Centers, Amsterdam, the Netherlands.
Lubos PolereckyDepartment of Earth Sciences, Utrecht University, Utrecht, the Netherlands.
Jean-François FlotInteruniversity Institute of Bioinformatics in Brussels-(IB)2 and Department of Organismal Biology, Université libre de Bruxelles, Brussels, Belgium.
Bernd W BrandtDepartment of Preventive Dentistry, Academic Centre for Dentistry Amsterdam (ACTA), University of Amsterdam and Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.
Martin BrasterSection Molecular Microbiology, A-LIFE, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.
Paul Iturbe EspinozaSection Molecular Microbiology, A-LIFE, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.
Joost W AertsSection Molecular Microbiology, A-LIFE, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.
Marion M Meima-FrankeDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, the Netherlands.
Sander R PiersmaDepartment of Medical Oncology, OncoProteomics Laboratory, Amsterdam University Medical Centers, Amsterdam, the Netherlands.
Catalin M BunducSection Molecular Microbiology, A-LIFE, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.
Roy UmmelsDepartment of Medical Microbiology and Infection Control, Amsterdam University Medical Centers, Amsterdam, the Netherlands.
Arnab PainBioscience program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Tuwal, Saudi Arabia.
Emily J FlemingDepartment of Biological Sciences, California State University, Chico, CA, USA.
Nicole N van der WelElectron Microscopy Center Amsterdam, Amsterdam University Medical Centers, Amsterdam, the Netherlands.
Vasile D GhermanHydrotechnical Engineering Department, Politehnica University of Timişoara, Timişoara, Romania.
Serban M SarbuDepartment of Biological Sciences, California State University, Chico, CA, USA.
Paul L E BodelierDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, the Netherlands.
Wilbert BitterSection Molecular Microbiology, A-LIFE, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands. w.bitter@amsterdamumc.nl.ORCID http://orcid.org/0000-0001-8347-6511
Amsterdam University Medical Centers · NLVrije Universiteit Amsterdam · NLCalifornia State University, Chico · USKing Abdullah University of Science and Technology · SANetherlands Institute of Ecology · NLUtrecht University · NLAcademic Center for Dentistry Amsterdam · NLPolytechnic University of Timişoara · ROUniversité Libre de Bruxelles · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

So far, only members of the bacterial phyla Proteobacteria and Verrucomicrobia are known to grow methanotrophically under aerobic conditions. Here we report that this metabolic trait is also observed within the Actinobacteria. We enriched and cultivated a methanotrophic Mycobacterium from an extremely acidic biofilm growing on a cave wall at a gaseous chemocline interface between volcanic gases and the Earth's atmosphere. This Mycobacterium, for which we propose the name Candidatus Mycobacterium methanotrophicum, is closely related to well-known obligate pathogens such as M. tuberculosis and M. leprae. Genomic and proteomic analyses revealed that Candidatus M. methanotrophicum expresses a full suite of enzymes required for aerobic growth on methane, including a soluble methane monooxygenase that catalyses the hydroxylation of methane to methanol and enzymes involved in formaldehyde fixation via the ribulose monophosphate pathway. Growth experiments combined with stable isotope probing using

Indexed as

EcosystemMycobacteriumMethanePhylogenyProteomicsMethane

Identifiers

PMID36329197
OpenAlexW4308045440

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.