Evidence map›Paper›PMID 36329104›Full record

ArticleScientific reports2022

Modelling the impact of protein-kinase R allelic variant on HIV biomarkers trajectories by means of latent class mixed models.

Chiara Brombin, Sabrina Bagaglio, Federica Cugnata, Antonella Castagna, Caterina Uberti-Foppa, Stefania Salpietro, Clelia Di Serio, Giulia Morsica

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Chiara Brombin *University Centre for Statistics in the Biomedical Sciences (CUSSB), Milan, Italy. brombin.chiara@hsr.it.
Sabrina Bagaglio *Department of Infectious Diseases, IRCCS San Raffaele Scientific Institute, Milan, Italy.
Federica CugnataUniversity Centre for Statistics in the Biomedical Sciences (CUSSB), Milan, Italy.
Antonella CastagnaVita-Salute San Raffaele University, Milan, Italy.
Caterina Uberti-FoppaVita-Salute San Raffaele University, Milan, Italy.
Stefania SalpietroDepartment of Infectious Diseases, IRCCS San Raffaele Scientific Institute, Milan, Italy.
Clelia Di SerioUniversity Centre for Statistics in the Biomedical Sciences (CUSSB), Milan, Italy.
Giulia MorsicaDepartment of Infectious Diseases, IRCCS San Raffaele Scientific Institute, Milan, Italy.
Vita-Salute San Raffaele University · ITIstituti di Ricovero e Cura a Carattere Scientifico · ITIstituto di Ricovero e Cura a Carattere Scientifico San RaffaeleUniversità della Svizzera italiana · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This paper is based on a retrospective longitudinal study on people living with HIV under antiretroviral treatment (ART) where allelic variants (either heterozygous CT genotype or homozygous CC genotype) have been evaluated at position -168 of the promoter region of the protein kinase R (-168/PKR). In general, antiviral effects of interferon are partially mediated by a RNA-dependent protein kinase (PKR) that, once activated, inhibits protein synthesis. Indeed, activation of PKR response can inhibit HIV replication. To explore the role of allelic variants in shaping dynamics of commonly monitored HIV biomarkers, CD4 cells, CD8 cells and HIV-load were modelled within a latent class mixed model (LCMM) to account for participants' heterogeneity over time. The estimated models identified two sub-groups from CD4 and HIV-load dynamics, revealing better outcomes for subgroups of participants with the heterozygous CT genotype. Heterozygous CT subjects in one of the two identified subgroups exhibited higher increase of CD4 cells and more marked decrease of HIV-load, over time, with respect to the homozygous CC subjects assigned to the same group.

Indexed as

HIV InfectionsAntiviral AgentsBiomarkerseIF-2 KinaseHumansLongitudinal StudiesRetrospective StudiesViral LoadAntiviral AgentsBiomarkerseIF-2 Kinase

Identifiers

PMID36329104
PMCPMC9633692
OpenAlexW4308486276

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.