Evidence map›Paper›PMID 36329062›Full record

ArticleScientific data2022

Chromosome-level genome assembly of the bar-headed goose (Anser indicus).

Yawen Zhang, Bo Zhang, Ying Zhang, Ruixue Nie, Jian Zhang, Peng Shang, Hao Zhang

Abstract readDataset
In one paragraph

Article in Scientific data, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yawen Zhang *National Engineering Laboratory for Animal Breeding, Plateau Animal Genetics Research Center, China Agricultural University, Beijing, 100193, China.
Bo Zhang *National Engineering Laboratory for Animal Breeding, Plateau Animal Genetics Research Center, China Agricultural University, Beijing, 100193, China.
Ying ZhangNational Engineering Laboratory for Animal Breeding, Plateau Animal Genetics Research Center, China Agricultural University, Beijing, 100193, China.
Ruixue NieNational Engineering Laboratory for Animal Breeding, Plateau Animal Genetics Research Center, China Agricultural University, Beijing, 100193, China.
Jian ZhangCollege of Animal Science, Tibet Agriculture and Animal Husbandry College, Linzhi, 860000, China.
Peng ShangCollege of Animal Science, Tibet Agriculture and Animal Husbandry College, Linzhi, 860000, China.
Hao ZhangNational Engineering Laboratory for Animal Breeding, Plateau Animal Genetics Research Center, China Agricultural University, Beijing, 100193, China. zhanghao827@163.com.ORCID 0000-0003-4093-5647

Funding

National Natural Science Foundation of China (National Science Foundation of China) 31972532
6 · The paper itself

Abstract

Bar-headed geese (Anser indicus) are adaptable to plateau environments. In this study, we sequenced and assembled a high-quality chromosome-level genome of the bar-headed goose using PacBio long reads and Hi-C technique, and generated 115.73 Gb of Illumina short-reads and 95.89 Gb of PacBio long-reads. The assembled bar-headed goose genome, with a contig N50 of 5.734 Mb and a scaffold N50 of 65.77 Mb, is 1.129 Gb in length and includes 33 chromosomes and 451 fragments. BUSCO assessment yielded a completeness score of 94.4%. In total, 15,376 protein-coding genes were predicted, of which 94.95% had homologs in protein databases. We identified 78 positively selected genes (PSGs) in the bar-headed goose genome, which were mainly enriched in calcium ion and ATP-binding. This bar-headed goose genome will be an important resource for increasing our understanding regarding the genetic basis of adaptation to life at a high altitude.

Indexed as

ChromosomesGeeseGenomeAnimalsHigh-Throughput Nucleotide SequencingPhylogenySequence Analysis, DNA

Identifiers

PMID36329062
PMCPMC9633837

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.