Evidence map›Paper›PMID 36326250›Full record

ArticlemBio2022

Cryo-EM Structure of the Type IV Pilus Extension ATPase from Enteropathogenic Escherichia coli.

Ashok R Nayak, Pradip K Singh, Jinlei Zhao, Montserrat Samsó, Michael S Donnenberg

Open access · goldAbstract read
In one paragraph

Article in mBio, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Type IV pili ofEcoSal Plus · 2024
    Review
  5. Salmonella YqiC exerts its function through an oligomeric state.Protein science : a publication of the Protein Society · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ashok R NayakDepartment of Physiology and Biophysics, Virginia Commonwealth Universitygrid.224260.0, Richmond, Virginia, USA.
Pradip K SinghDepartment of Internal Medicine, Virginia Commonwealth Universitygrid.224260.0, Richmond, Virginia, USA.
Jinlei ZhaoDepartment of Internal Medicine, Virginia Commonwealth Universitygrid.224260.0, Richmond, Virginia, USA.
Montserrat SamsóDepartment of Physiology and Biophysics, Virginia Commonwealth Universitygrid.224260.0, Richmond, Virginia, USA.
Michael S DonnenbergDepartment of Internal Medicine, Virginia Commonwealth Universitygrid.224260.0, Richmond, Virginia, USA.ORCID 0000-0002-8818-3184
Virginia Commonwealth University · US

Funding

UVA molecular electron microscopy core for the Mid-Atlantic regionU24GM116790 · NIGMS · UNIVERSITY OF VIRGINIA · PI GALKIN, VITOLD, SAMSO, MONTSERRAT · 2017 to 2021
$2.9M
RyR architecture and gatekeeping of internal calcium storesR01AR068431 · NIAMS · VIRGINIA COMMONWEALTH UNIVERSITY · PI SAMSO, MONTSERRAT · 2017 to 2021
$2.0M
Progress In Understanding Type IV Pilus BiogenesisR56AI111767 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI DONNENBERG, MICHAEL S · 2015 to 2015
$455k
NIAID NIH HHS R56 AI111767NIAMS NIH HHS R01 AR068431NIGMS NIH HHS U24 GM116790
6 · The paper itself

Abstract

Type 4 pili (T4P) are retractable surface appendages found on numerous bacteria and archaea that play essential roles in various microbial functions, including host colonization by pathogens. An ATPase is required for T4P extension, but the mechanism by which chemical energy is transduced to mechanical energy for pilus extension has not been elucidated. Here, we report the cryo-electron microscopy (cryo-EM) structure of the BfpD ATPase from enteropathogenic Escherichia coli (EPEC) in the presence of either ADP or a mixture of ADP and AMP-PNP. Both structures, solved at 3 Å resolution, reveal the typical toroid shape of AAA+ ATPases and unambiguous 6-fold symmetry. This 6-fold symmetry contrasts with the 2-fold symmetry previously reported for other T4P extension ATPase structures, all of which were from thermophiles and solved by crystallography. In the presence of the nucleotide mixture, BfpD bound exclusively AMP-PNP, and this binding resulted in a modest outward expansion in comparison to the structure in the presence of ADP, suggesting a concerted model for hydrolysis.

Indexed as

Enteropathogenic Escherichia coliAdenosine TriphosphatasesAdenylyl ImidodiphosphateCryoelectron MicroscopyFimbriae, BacterialFimbriae ProteinsHumansAdenosine TriphosphatasesAdenylyl ImidodiphosphateFimbriae ProteinsATPaseenzyme kineticsEscherichia colipilipilus assemblystructural biology

Identifiers

PMID36326250
PMCPMC9765406
OpenAlexW4308059905

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.