Evidence map›Paper›PMID 36325032›Full record

ArticleVirus evolution2022

Host prediction for disease-associated gastrointestinal cressdnaviruses.

Cormac M Kinsella, Martin Deijs, Christin Becker, Patricia Broekhuizen, Tom van Gool, Aldert Bart, Arne S Schaefer, Lia van der Hoek

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Virus evolution, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Vertebrate-tropism of a cressdnavirus lineage implicated by poxvirus gene capture.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Correlation of Redondovirus andInternational journal of molecular sciences · 2023
    Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Cormac M KinsellaAmsterdam UMC, Laboratory of Experimental Virology, Department of Medical Microbiology and Infection Prevention, University of Amsterdam, Meibergdreef 9, Amsterdam 1105 AZ, The Netherlands.
Martin DeijsAmsterdam UMC, Laboratory of Experimental Virology, Department of Medical Microbiology and Infection Prevention, University of Amsterdam, Meibergdreef 9, Amsterdam 1105 AZ, The Netherlands.
Christin BeckerDepartment of Periodontology, Oral Surgery and Oral Medicine, Institute for Dental and Craniofacial Sciences, Berlin Institute of Health, Charité-Universitätsmedizin Berlin, Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin, Germany.
Patricia BroekhuizenAmsterdam UMC, Laboratory of Clinical Parasitology, Department of Medical Microbiology and Infection Prevention, University of Amsterdam, Meibergdreef 9, Amsterdam 1105 AZ, The Netherlands.
Tom van GoolAmsterdam UMC, Laboratory of Clinical Parasitology, Department of Medical Microbiology and Infection Prevention, University of Amsterdam, Meibergdreef 9, Amsterdam 1105 AZ, The Netherlands.
Aldert BartDepartment of Medical Microbiology, Tergooi MC, Van Riebeeckweg 212, Hilversum 1213 XZ, The Netherlands.ORCID https://orcid.org/0000-0001-6605-6347
Arne S SchaeferDepartment of Periodontology, Oral Surgery and Oral Medicine, Institute for Dental and Craniofacial Sciences, Berlin Institute of Health, Charité-Universitätsmedizin Berlin, Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin, Germany.
Lia van der HoekAmsterdam UMC, Laboratory of Experimental Virology, Department of Medical Microbiology and Infection Prevention, University of Amsterdam, Meibergdreef 9, Amsterdam 1105 AZ, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Metagenomic techniques have facilitated the discovery of thousands of viruses, yet because samples are often highly biodiverse, fundamental data on the specific cellular hosts are usually missing. Numerous gastrointestinal viruses linked to human or animal diseases are affected by this, preventing research into their medical or veterinary importance. Here, we developed a computational workflow for the prediction of viral hosts from complex metagenomic datasets. We applied it to seven lineages of gastrointestinal cressdnaviruses using 1,124 metagenomic datasets, predicting hosts of four lineages. The

Indexed as

cressdnavirushost identificationmetagenomicsperiodontitisprotistRedondoviridae

Identifiers

PMID36325032
PMCPMC9615429

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.