Evidence map›Paper›PMID 36324501›Full record

ArticleFrontiers in genetics2022

Applying differential network analysis to longitudinal gene expression in response to perturbations.

Shuyue Xue, Lavida R K Rogers, Minzhang Zheng, Jin He, Carlo Piermarocchi, George I Mias

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Shuyue XueDepartment of Physics and Astronomy, Michigan State University, East Lansing, MI, United States.
Lavida R K RogersDepartment of Biological Sciences, University of the Virgin Islands, St Thomas, US Virgin Islands.
Minzhang ZhengInstitute for Quantitative Health Science and Engineering, Michigan State University, East Lansing, MI, United States.
Jin HeDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, United States.
Carlo PiermarocchiDepartment of Physics and Astronomy, Michigan State University, East Lansing, MI, United States.
George I MiasDepartment of Physics and Astronomy, Michigan State University, East Lansing, MI, United States.
Michigan State University · USUnited States Virgin Islands Department of Health · VI

Funding

Data-driven models of hematological cell fate decision and differentiationR01GM122085 · NIGMS · MICHIGAN STATE UNIVERSITY · PI PIERMAROCCHI, CARLO · 2016 to 2020
$1.8M
NIGMS NIH HHS R01 GM122085
6 · The paper itself

Abstract

Differential Network (DN) analysis is a method that has long been used to interpret changes in gene expression data and provide biological insights. The method identifies the rewiring of gene networks in response to external perturbations. Our study applies the DN method to the analysis of RNA-sequencing (RNA-seq) time series datasets. We focus on expression changes: (i) in saliva of a human subject after pneumococcal vaccination (PPSV23) and (ii) in primary B cells treated

Indexed as

B cellsco-expression networksgene expressionRNA-seqsalivatranscriptomics

Identifiers

PMID36324501
PMCPMC9618823
OpenAlexW4306385626

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.