Evidence map›Paper›PMID 36323871›Full record

ArticleScientific reports2022

Estimates of genomic heritability and genome-wide association studies for blood parameters in Akkaraman sheep.

Yunus Arzik, Mehmet Kizilaslan, Stephen N White, Lindsay M W Piel, Mehmet Ulas Cinar

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Yunus ArzikDepartment of Animal Science, Faculty of Agriculture, Erciyes University, 38039, Kayseri, Türkiye.
Mehmet KizilaslanDepartment of Animal Science, Faculty of Agriculture, Erciyes University, 38039, Kayseri, Türkiye.
Stephen N WhiteDepartment of Veterinary Microbiology and Pathology, College of Veterinary Medicine, Washington State University, Pullman, WA, 99164, USA.
Lindsay M W PielUSDA-ARS Animal Disease Res., 3003 ADBF, WSU Pullman, WA, 99164, USA.
Mehmet Ulas CinarDepartment of Animal Science, Faculty of Agriculture, Erciyes University, 38039, Kayseri, Türkiye. mucinar@erciyes.edu.tr.
Washington State University · USErciyes University · TRMinistry of Agriculture and Forestry · LA

Funding

Bilimsel Araştırma Projeleri, Erciyes Üniversitesi FDK-2020-10807
6 · The paper itself

Abstract

The aim of this study was to estimate genomic heritability and the impact that genetic backgrounds have on blood parameters in Akkaraman sheep by conducting genome-wide association studies and regional heritability mapping analysis. Genomic heritability estimates for blood parameters ranged from 0.00 to 0.55, indicating that measured phenotypes have a low to moderate heritability. A total of 7 genome- and 13 chromosome-wide significant SNPs were associated with phenotypic changes in 15 blood parameters tested. Accordingly, SCN7A, SCN9A, MYADM-like, CCDC67, ITGA9, MGAT5, SLC19A1, AMPH, NTRK2, MSRA, SLC35F3, SIRT6, CREB3L3, and NAV3 genes as well as three undefined regions (LOC101117887, LOC106991526 and LOC105608461) were suggested as candidates. Most of the identified genes were involved in basic biological processes that are essential to immune system function and cellular growth; specific functions include cellular transport, histone deacetylation, cell differentiation, erythropoiesis, and endocytosis. The top significant SNP for HCT, MCH, and MCHC was found within a genomic region mainly populated by the MYADM-like gene family. This region was previously suggested to be under historical selection pressure in many sheep breeds from various parts of the world. These results have implications on animal breeding program studies due to the effect that the genetic background has on blood parameters, which underlying many productive and wellness related traits.

Indexed as

GenomeGenome-Wide Association StudyAnimalsGenomicsPhenotypePolymorphism, Single NucleotideSheep

Identifiers

PMID36323871
PMCPMC9630504
OpenAlexW4308147271

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.