Evidence map›Paper›PMID 36323726›Full record

ArticleScientific reports2022

Pathogenome comparison and global phylogeny of Escherichia coli ST1485 strains.

Ahmed M Hammad, Narjol Gonzalez-Escalona, Amira El Tahan, Nasser H Abbas, Sara S K Koenig, Anna Allué-Guardia, Mark Eppinger, Maria Hoffmann

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 17 citations in OpenAlex.

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  13. Unraveling the Resistome, Virulome, and Pathogenicity ofInternational journal of microbiology · 2025
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  15. Biofilm Formation Ability of ESBL/pAmpC-ProducingAntibiotics (Basel, Switzerland) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Ahmed M HammadDepartment of Food Hygiene and Control, Faculty of Veterinary Medicine, University of Sadat City, Sadat City, Egypt. hammad@vet.usc.edu.eg.
Narjol Gonzalez-EscalonaCenter for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, MD, USA.
Amira El TahanDepartment of Food Hygiene and Control, Faculty of Veterinary Medicine, University of Sadat City, Sadat City, Egypt.
Nasser H AbbasDepartment of Environmental Biotechnology, Genetic Engineering and Biotechnology Research Institute, University of Sadat City, Sadat City, Egypt.
Sara S K KoenigDepartment of Molecular Microbiology and Immunology, South Texas Center for Emerging Infectious Diseases (STCEID), San Antonio, TX, USA.
Anna Allué-GuardiaDepartment of Molecular Microbiology and Immunology, South Texas Center for Emerging Infectious Diseases (STCEID), San Antonio, TX, USA.
Mark EppingerDepartment of Molecular Microbiology and Immunology, South Texas Center for Emerging Infectious Diseases (STCEID), San Antonio, TX, USA.
Maria HoffmannCenter for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, MD, USA.
Texas Center for Infectious Disease · USUniversity of Sadat City · EGUnited States Food and Drug Administration · US

Funding

Identification of Regulatory Loci of Stx2a Cytotoxin Production in Shiga toxin producing Escherichia coli (STEC)SC1GM135110 · NIGMS · UNIVERSITY OF TEXAS SAN ANTONIO · PI EPPINGER, MARK · 2020 to 2023
$1.5M
National Institute of General Medical Sciences of the National Institutes of Health SC1GM135110NIGMS NIH HHS SC1 GM135110US Department of Homeland Security 2014-ST-062-000058
6 · The paper itself

Abstract

Escherichia coli ST1485 strains belong to the clinically important phylogroup F and have disseminated worldwide in humans, animals, and the environment. Here, we elucidated the pathogenome of a global collection of E. coli ST1485 isolates from diverse sources retrieved from public databases and a high-quality sequenced complete genome of colistin-resistant E. coli strain CFSAN061771 isolated from raw milk cheese which designated as a reference strain. CFSAN061771 belongs to O83:H42-ST1485 pathotype and carries a conjugative ColV plasmid, pCFSAN061771_01, combining extraintestinal virulence genes (ompt, sitA, iroN, etsC, traT, cvaC, hylF, iss, tsh, mchf, iucC, iutA) with a multidrug resistance island (bla

Indexed as

Escherichia coli InfectionsEscherichia coli ProteinsAnimalsAnti-Bacterial AgentsColistinDrug Resistance, Multiple, BacterialEscherichia coliHumansPhylogenyPlasmidsAnti-Bacterial AgentsColistinEscherichia coli Proteins

Identifiers

PMID36323726
PMCPMC9630279
OpenAlexW4307922129

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.