Evidence map›Paper›PMID 36322788›Full record

SynthesisJournal of medical Internet research2022

A Hybrid Architecture (CO-CONNECT) to Facilitate Rapid Discovery and Access to Data Across the United Kingdom in Response to the COVID-19 Pandemic: Development Study.

Emily Jefferson, Christian Cole, Shahzad Mumtaz, Samuel Cox, Thomas Charles Giles, Sam Adejumo, Esmond Urwin, Daniel Lea, Calum Macdonald, Joseph Best and 68 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Journal of medical Internet research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

78 authors.

Emily JeffersonHealth Informatics Centre, Division of Population and Health Genomics, School of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0003-2992-7582
Christian ColeHealth Informatics Centre, Division of Population and Health Genomics, School of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0002-2560-2484
Shahzad MumtazHealth Informatics Centre, Division of Population and Health Genomics, School of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0003-2606-2405
Samuel CoxDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0002-9841-9816
Thomas Charles GilesDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0003-1356-4289
Sam AdejumoDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0001-6685-3047
Esmond UrwinDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0003-4626-2172
Daniel LeaDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0001-8152-0398
Calum MacdonaldUsher Institute, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0001-7857-9188
Joseph BestDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0001-6809-4179
Erum MasoodHealth Informatics Centre, Division of Population and Health Genomics, School of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0001-8790-5352
Gordon MilliganHealth Informatics Centre, Division of Population and Health Genomics, School of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0002-1171-5234
Jenny JohnstonHealth Informatics Centre, Division of Population and Health Genomics, School of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0002-6755-1267
Scott HorbanHealth Informatics Centre, Division of Population and Health Genomics, School of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0001-6431-8243
Ipek BircedHealth Informatics Centre, Division of Population and Health Genomics, School of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0002-0048-6720
Christopher HallHealth Informatics Centre, Division of Population and Health Genomics, School of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0003-1368-4619
Aaron S JacksonHealth Informatics Centre, Division of Population and Health Genomics, School of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0003-3217-012X
Clare CollinsDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0003-4679-9850
Sam RisingDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0002-6934-4480
Charlotte DodsleyDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0003-4825-1266
Jill HamptonHealth Informatics Centre, Division of Population and Health Genomics, School of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0002-3874-0819
Andrew HadfieldDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0002-2976-3605
Roberto SantosDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0003-1333-2605
Simon TarrDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0001-8464-1240
Vasiliki PanagiDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0002-4206-4024
Joseph LavagnaDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0002-3907-255X
Tracy JacksonUsher Institute, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0002-6188-3607
Antony ChuterLay Partnership in Healthcare Research, Lindfield, United Kingdom.ORCID 0000-0002-0646-5939
Jillian BeggsHealth Informatics Centre, Division of Population and Health Genomics, School of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0002-7591-3256
Magdalena Martinez-QueipoNational Health Service Digital, London, United Kingdom.ORCID 0000-0002-2847-334X
Helen WardSchool of Public Health, Imperial College London, London, United Kingdom.ORCID 0000-0001-8238-5036
Julie von ZiegenweidtDepartment of Haemotology, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0001-8776-1125
Frances BurnsCentre for Public Health, Belfast Institute of Clinical Science, Queens University Belfast, Belfast, United Kingdom.ORCID 0000-0001-5885-1981
Joanne MartinBlizard Institute, Faculty of Medicine and Dentistry, Queen Mary University of London, London, United Kingdom.ORCID 0000-0003-2828-7253
Neil SebireInstitute of Child Health, Great Ormond Street Hospital, London, United Kingdom.ORCID 0000-0001-5348-9063
Carole MorrisPublic Health Scotland, Edinburgh, United Kingdom.ORCID 0000-0001-8150-8217
Declan BradleyCentre for Public Health, Institute of Clinical Science, Queen's University Belfast, Belfast, United Kingdom.ORCID 0000-0003-1468-1823
Rob BaxterEPCC, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0002-3693-8725
Anni Ahonen-BishoppBC Platforms, Espoo, Finland.ORCID 0000-0002-4215-6228
Paul SmithBC Platforms, Espoo, Finland.ORCID 0000-0002-8598-1762
Amelia ShoemarkMolecular and Clinical Medicine, School of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0001-7360-6060
Ana M ValdesSchool of Medicine, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0003-1141-4471
Benjamin OllivereSchool of Medicine, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0002-1410-1756
Charlotte ManistyInstitute of Cardiovascular Sciences, University of College London, London, United Kingdom.ORCID 0000-0003-0245-7090
David EyreBig Data Institute, University of Oxford, Oxford, United Kingdom.ORCID 0000-0001-5095-6367
Stephanie GallantMolecular and Clinical Medicine, School of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0001-9499-3936
George JoyBarts Heart Centre, London, United Kingdom.ORCID 0000-0003-1467-5490
Andrew McAuleyClinical and Protecting Health Directorate, Public Health Scotland, Glasgow, United Kingdom.ORCID 0000-0002-6047-2400
David ConnellSchool of Medicine, University of Dundee, Dundee, United Kingdom.ORCID 0000-0002-7008-8883
Kate NorthstonePopulation Health Sciences, Avon Longitudinal Study of Parents and Children, Bristol, United Kingdom.ORCID 0000-0002-0602-1983
Katie JefferyRadcliffe Department of Medicine, Oxford University, Oxford, United Kingdom.ORCID 0000-0002-6506-2689
Emanuele Di AngelantonioBritish Heart Foundation Cardiovascular Epidemiology Unit, Department of Public Health and Primary Care, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0001-8776-6719
Amy McMahonBritish Heart Foundation Cardiovascular Epidemiology Unit, Department of Public Health and Primary Care, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0003-3973-2826
Mat WalkerBritish Heart Foundation Cardiovascular Epidemiology Unit, Department of Public Health and Primary Care, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0002-6334-2732
Malcolm Gracie SempleHealth Protection Research Unit in Emerging and Zoonotic Infections, Institute of Infections, University of Liverpool, Liverpool, United Kingdom.ORCID 0000-0001-9700-0418
Jessica Mai SimsUniversity College London, London, United Kingdom.ORCID 0000-0003-1565-7315
Emma LawrenceBioIndustry Association, London, United Kingdom.ORCID 0000-0001-9018-6010
Bethan DaviesSchool of Public Health, Imperial College London, London, United Kingdom.ORCID 0000-0002-6585-7641
John Kenneth BaillieOutbreak Data Analysis Platform, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0001-5258-793X
Ming TangNHS England, Worcestershire, United Kingdom.ORCID 0000-0002-5498-0839
Gary LeemingCivic Data Cooperative, Digital Innovation Facility, University of Liverpool, Liverpool, United Kingdom.ORCID 0000-0002-5554-5302
Linda PowerPublic Health England, London, United Kingdom.ORCID 0000-0001-7503-107X
Thomas BreezeAvon Longitudinal Study of Parents and Children, Bristol Medical School, University of Bristol, Bristol, United Kingdom.ORCID 0000-0003-2626-527X
Duncan MurrayUniversity of Birmingham, Birmingham, United Kingdom.ORCID 0000-0003-4664-3725
Chris OrtonPopulation Data Science, Swansea University Medical School, Swansea, United Kingdom.ORCID 0000-0002-9561-2493
Iain PierceBarts Heart Centre, St Bartholomew's Hospital, Barts Health NHS Trust, London, United Kingdom.ORCID 0000-0001-8546-5023
Ian HallNottingham Biomedical Research Centre, School of Medicine, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0001-9933-3216
Shamez LadhaniImmunisation and Countermeasures Division, Public Health England Colindale, London, United Kingdom.ORCID 0000-0002-0856-2476
Natalie GillsonUK Health Security Agency, London, United Kingdom.ORCID 0000-0002-6137-6728
Matthew WhitakerSchool of Public Health, Imperial College London, London, United Kingdom.ORCID 0000-0003-1363-6537
Laura ShallcrossInstitute of Health Informatics, UCL, London, United Kingdom.ORCID 0000-0003-1713-2555
David SeymourHealth Data Research UK, London, United Kingdom.ORCID 0000-0003-4194-2056
Susheel VarmaHealth Data Research UK, London, United Kingdom.ORCID 0000-0003-1687-2754
Gerry ReillyHealth Data Research UK, London, United Kingdom.ORCID 0000-0003-1427-3598
Andrew MorrisHealth Data Research UK, London, United Kingdom.ORCID 0000-0002-1766-0473
Susan HopkinsPublic Health England, London, United Kingdom.ORCID 0000-0001-5179-5702
Aziz SheikhCentre for Population Health Sciences, Usher Institute, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0001-7022-3056
Philip QuinlanDigital Research Service, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0002-3012-6646

Funding

British Heart Foundation CH/12/2/29428British Heart Foundation RG/13/13/30194British Heart Foundation RG/18/13/33946Chief Scientist OfficeDepartment of HealthMedical Research Council G9815508Medical Research Council MC_PC_15018Medical Research Council MC_PC_19002Medical Research Council MC_PC_19009Medical Research Council MC_PC_19059Medical Research Council MC_PC_20058Medical Research Council MR/V03488X/1Medical Research Council MR/W014335/1Medical Research Council MR/W026813/1
6 · The paper itself

Abstract

backgroundCOVID-19 data have been generated across the United Kingdom as a by-product of clinical care and public health provision, as well as numerous bespoke and repurposed research endeavors. Analysis of these data has underpinned the United Kingdom's response to the pandemic, and informed public health policies and clinical guidelines. However, these data are held by different organizations, and this fragmented landscape has presented challenges for public health agencies and researchers as they struggle to find relevant data to access and interrogate the data they need to inform the pandemic response at pace.

objectiveWe aimed to transform UK COVID-19 diagnostic data sets to be findable, accessible, interoperable, and reusable (FAIR).

methodsA federated infrastructure model (COVID - Curated and Open Analysis and Research Platform [CO-CONNECT]) was rapidly built to enable the automated and reproducible mapping of health data partners' pseudonymized data to the Observational Medical Outcomes Partnership Common Data Model without the need for any data to leave the data controllers' secure environments, and to support federated cohort discovery queries and meta-analysis.

resultsA total of 56 data sets from 19 organizations are being connected to the federated network. The data include research cohorts and COVID-19 data collected through routine health care provision linked to longitudinal health care records and demographics. The infrastructure is live, supporting aggregate-level querying of data across the United Kingdom.

conclusionsCO-CONNECT was developed by a multidisciplinary team. It enables rapid COVID-19 data discovery and instantaneous meta-analysis across data sources, and it is researching streamlined data extraction for use in a Trusted Research Environment for research and public health analysis. CO-CONNECT has the potential to make UK health data more interconnected and better able to answer national-level research questions while maintaining patient confidentiality and local governance procedures.

Indexed as

COVID-19HumansPandemicsUnited Kingdomclinical careCOVID-19data extractiondata governancedata privacyfederated networkhealth carehealth care recordhealth datainfrastructure modelmeta-analysispublic health

Identifiers

PMID36322788
PMCPMC9822177

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.