Evidence map›Paper›PMID 36322721›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Cryo-electron microscopy structure of the H3-H4 octasome: A nucleosome-like particle without histones H2A and H2B.

Kayo Nozawa, Yoshimasa Takizawa, Leonidas Pierrakeas, Chizuru Sogawa-Fujiwara, Kazumi Saikusa, Satoko Akashi, Ed Luk, Hitoshi Kurumizaka

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Structure and dynamics of 2x(CENP-A/H4)Life science alliance · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Cryo-EM Analysis of a Unique Subnucleosome Containing Centromere-Specific Histone Variant CENP-A.Genes to cells : devoted to molecular & cellular mechanisms · 2025
    Article
  11. Histone demethylases in autophagy and inflammation.Cell communication and signaling : CCS · 2025
    Review
  12. Non-nucleosomal (CENP-A/H4)bioRxiv : the preprint server for biology · 2025
    Article
  13. Article
  14. Article
  15. ACS omega · 2024
    Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Kayo NozawaLaboratory of Chromatin Structure and Function, Institute for Quantitative Biosciences, The University of Tokyo, Tokyo 113-0032, Japan.ORCID 0000-0001-6677-7195
Yoshimasa TakizawaLaboratory of Chromatin Structure and Function, Institute for Quantitative Biosciences, The University of Tokyo, Tokyo 113-0032, Japan.
Leonidas PierrakeasDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11794.
Chizuru Sogawa-FujiwaraLaboratory of Chromatin Structure and Function, Institute for Quantitative Biosciences, The University of Tokyo, Tokyo 113-0032, Japan.ORCID 0000-0002-6234-3119
Kazumi SaikusaNational Metrology Institute of Japan, National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki 305-8563, Japan.ORCID 0000-0003-4135-2048
Satoko AkashiGraduate School of Medical Life Science, Yokohama City University, Yokohama, Kanagawa 230-0045, Japan.
Ed LukDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11794.ORCID 0000-0002-6619-2258
Hitoshi KurumizakaLaboratory of Chromatin Structure and Function, Institute for Quantitative Biosciences, The University of Tokyo, Tokyo 113-0032, Japan.ORCID 0000-0001-7412-3722
The University of Tokyo · JPStony Brook University · USHiroshima University · JPTokyo Institute of Technology · JPYokohama City University · JP

Funding

Mechanisms of chromatin remodeling at yeast promotersR01GM104111 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI LUK, EDWARD E · 2013 to 2022
$2.8M
Uncovering the biomolecular function of the R-octasome--a nucleosome-like particle with only H3 and H4 histonesR01GM147795 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI LUK, EDWARD E · 2023 to 2024
$741k
NIGMS NIH HHS R01 GM104111NIGMS NIH HHS R01 GM147795
6 · The paper itself

Abstract

The canonical nucleosome, which represents the major packaging unit of eukaryotic chromatin, has an octameric core composed of two histone H2A-H2B and H3-H4 dimers with ∼147 base pairs (bp) of DNA wrapped around it. Non-nucleosomal particles with alternative histone stoichiometries and DNA wrapping configurations have been found, and they could profoundly influence genome architecture and function. Using cryo-electron microscopy, we solved the structure of the H3-H4 octasome, a nucleosome-like particle with a di-tetrameric core consisting exclusively of the H3 and H4 histones. The core is wrapped by ∼120 bp of DNA in 1.5 negative superhelical turns, forming two stacked disks that are connected by a H4-H4' four-helix bundle. Three conformations corresponding to alternative interdisk angles were observed, indicating the flexibility of the H3-H4 octasome structure. In vivo crosslinking experiments detected histone-histone interactions consistent with the H3-H4 octasome model, suggesting that H3-H4 octasomes or related structural features exist in cells.

Indexed as

HistonesNucleosomesChromatinCryoelectron MicroscopyDNAChromatinDNAHistonesNucleosomeschromatin structurecryo–electron microscopynucleosome

Identifiers

PMID36322721
PMCPMC9659345
OpenAlexW4308146249

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.